RNA id: TU198915


Basic Information

Item Value
RNA id TU198915
length 4380
RNA type TUCP
GC content 0.45
exon number 2
gene id G168015
representative True

Chromosome Information

Item Value
chromosome id NC_047604.1
NCBI id CM018550.1
chromosome length 29376037
location 18961708 ~ 18966613 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ACTGCTAAAGTAGCATCCCTATCACTGCTGACTGGGCTCTGTGTAATGCCTTCCTCATGATAGTTTCTCTGAATGGTGGCCGCATGTATTAGTCTGCATTAATTCTTACCATTTACACCAGCAACACTCAAGGTCAGGCTATAGATCCAaaaccatcaccacccactgaaGAAAATATTCAACCACTTGACATCATGCACTGATAACTGAAATAATCCTATTAGTTTCTACTTGAACAGTGAATTACAATGTGCAACCTTCAACAATAAATTGGCTCTACTACTGAACTACACGACAAACAATAAAGCAGGTGTTTTCCCCCCGAGGAATATTAAGCAAAACCGGTAAGACTGACCTGTACGTTCAATGTAGTCCACACACTTCTCAATAAACAGAGGAATAGGCCTGTCTGGGGTGACCAAGTTCTGTAGAGGAACACCAAAATAGTTGCTTTCCCAATTTCTTCGAGTTGGCGGATACAGTGGCTTTGGAACTTTTGCTTTAAcctTTCGGTTCCTTGTTTTttgctgctttctttttcttcaactTCTTGTCATCCTGCTCTGGGTCTGAAGTGATGGCTGGATTGTCTATCCCTCCTTTCCATGGATCCACAGGTGAAAGTAAAGGGTCCTCTTCACTTCCACGGTTACCCctgccttttttcttcttctgcacTGCCGGCCCTGATtcatcatcactgacatcaGAGTGCACTCGTCTATGATACGCTTTTGTCTTGCTGAAAAGGATCTTTGATCGATGTTTGTATTTAGATGGTCGCCTGCTACCCTGTGACTTCAATGTACGATCAAAACCATTCTCCTCATCACCATAAAAACCATGATGGCCACCAAATGAGTTGCGCATCTTGACTATCCTGCTATGGGTGTCCTCTGGAACAGTGTAAATGTCATCGTTGAAACCTTTTGATTTGGGGAGAGTGTCTGCTGGATCTGCATAATTGTCAGCCACCTCAAGGTCATCATGGACCATAACTGGACCTCGTGTTCTCCTGCTGGCCTTCATTCCAGCTTCAATGGTCTTCAAAAGGTTGGGGTCCAACTTCTTAACATTAGGCTTGTTTAGCACAGGTTTAGGTCTCACTGGGGGAGGCACTTTGTGGTTGCGTTCATGATCACCTACGGGTGTGCTATGGACAGGGTACTCGTTCCCTTCCAAGTCAATTTTATACTTTCTTTCACTAGGGGTGGGCAGCAGCTGTACATCATCCCCTATAGGGCTATAAGGTGGCGGTCCCTCAGCATCATCTTCAGAGTCAGGGTAATAAGAGTACGCTGGTGAATGGTTGTGTGGTGACTGAGGGAAGACATCTTCAGAGGTGCCATGGTCCCGTGTGCTATCAAACATGAAGGAGCTCTCTATACTGTTCTTTTTCTCAAGTACTTCATTGAAAAATGGTGTGAACACTTCCGTTTGCCTGTGGTACTGAGACAACGAGTAGAGTGCTGTAAATTTGGCTGTGATTTCTGTAGCAATGTGTTCCCCTTCAGTCATCAGCTCCTTGATTGCCTCATTCTCAAAGAAATCAGCCTGGCTGTCCGTTATAGCCACCATTTGGACCGGAATGACATCTTGGACCTCTGCCAAGAATGCCCGCAACATAGCCATGGAAGCCTTTCGTTTTGCTGAGTAGACAAGTATATATCCATGCACCAATTCATCCTTTCTGATTCCAATTGAGGAGTGGTAAGAGAGGACAGTGACTTGTATGCGCCTACGACTGTCACCAATGATTTTGTCGAGGTACAGGGTGTTGCTCTGACCAGGCTGACCAGCACTACAGGAATGTGAATCCAGAAAAGGTGAGAGAATAAGATCCACGCTGAATGGATCTCCGCACATGGCACACATAACTATTCGCAAATCTGTTTCAGACAAATCTTTGATGGAGGGCACGGGACTCATCAAGTCAAAATTGTGCTTTAGGCCTTCTAGGACTGCTCTGAGCGCTTGTTTTATTTGAGACTCGTTAAACTTTCGGGGAAAGGTCCCAGAGGGCATGTCTATGAATGTGCACTGTAGCTTATTAGCAAGCTGTTGGCCCTGATGCCTTAAAATAGGCATGTTTTTGCAAACACTGTCTCGCTGACCTGCTAAGATTAGAATAAATGGCGATGGATGGGCAAATCTGTCTCTTCTGCCCTGAGAAATCTCAGCTCGGATTCGGCTTATGCGATCGCCAATGTAATTAAGTGACTCTATTGAACTGAAGACACAGAAGAACCCATGAGGTTTGAAATTTGATAGCCAGGAATGGTTCAAAAGCATGGGAGAATTTACATCAACAGATAAAAGTTCCAATTCATAGATCTTACCATCAAGGGTATATTCATCATCTGTGGACTGAGCTTTTATTTCATTAGCAAGTTCTTGAGCTAGTCCTTCACGGCCAAGAAGACACAAGTTCACTTTATCAAGATTGGAACTGTTGTAGTACAGATTAGTGCGACCGTGGTCCAACTGAACCAGCCTATTTGCAAGCACCTGCTCAACTTTCAGATCCACACAGCTCACACCACTCAGACACGTCTCTTTGGTGGGATGATAAACAAATCCGATGTGTTTCAGTAAAAGGGACTCCCTATCTGGGGCAAGTTTCTGTAGAGCTCTGTATCTGGGCTCCTCGTTGAGTACAGTGTGGATTTCGCTCATCTTATCACAACTTGGGGTGGCATTCAAATCCAAGTCATAAAACAGCTCGGCATGCTCAAATAGCATTTCCTGAAACTCCTCTTTGGCCCCTTCAACTATTTCCTGCTGATGCAGCGCATACACGTCTCTGCGATCAGCTTCTGTGATATACTTGTATGCCTCGTCCTCCATGACGAAACATATAATCTCTTCCCACGGTTGGCCAGGACTTATGAAATGCACTCGCTCCAGTGTCTTCTTGAATTTTTCCTTCATTTCGAGTCGCCTCTTTTCAGATATCAAATGCTGGACATGGTTTTGGAAAATCCTCTCACCTTCTGCCGTTTTAAGGATGTCAAAGGGGACTCTTCTGTCATCTGTTTTGTTAACATGGTCTGTCTCATCCCATGGGGTTTGCTCCAGCACAACAAAGTAGTACTGAAATTCATTCTTGCTTTTTAACAGGTTCTGAGCATCTGTCCAGCTCAGGTTCTCAATCTCTTCCAAGTTGTTAAGCATTTTGTTAAGAACTTTTGGCAAACTGGAGAGATAAtcgtctcttctcttcttgATATGCTCTTGTCTCAGCTGTTCAATATGCTTCGAAAAGGTGTTTCTAGCTTTCCGAGTACCTTCCAAATTAATGTATTCCTCGTAGTCTGGATGGTTTTTCAATGAGTTGCTCACAACTTTCCAGCTCGTGTGATAATCTCGGACAGACTGAACAATAAGCTTTTCAAACTTGACCGTGACTGTGGCTACTAATTGTCTCTGAGCTTTGTAAGCCTCCAAGTATGGGATAATTTTGGGTTTACCTCGTGTTTTGTCCATTTGCTGGGTTAGCGCATTAAAACAGAGGTCCACGTTGACAGATGACAGAGCCGATGTCTCAACCACCAGAAGATTCTTTTTGCTTGCAGCAAAAGTCTGGACATCCCGTAAGTATTGCTCTACACACGAATCACATTTCGTTGCAGCAATGATAATGGGTTTTTTTGACTTGGCAATTTGTGAGTACAGGCTATTGACAAATTTCATCTGGTCATCAAATTTTCTGTTGCATCCTTTGCTTACATCTATGCACAAGACAAAACCGTCGATATTAAGCTTTCCATCAGGCATCTGCTTCTGATCAAAATCCTGCTCCAAGCCAAGCTGATCTGTGCAAATATACATCAGTTTTTCAGCAGACTGCAGCTTTGTAGTCGCAGCCCGCTTAGAGTAGGGTTGCAAATTTGTGCTCCGATGAGGCAAAAAGGTCTGGTCGTCAATAAATTCAGTCTGTTCGATGACTTGAATTCGACAGTCAAGGCCATCGTCTCCTCTGTGTAACACTTCCCCCCAGTACAGGAAGTGATCATTGTTCACCACACGACCTCCAAAGTCGATTGTGCTCAACACAGAAGTGTGCTCTGAGTAGTAGCTGTCCGCGCTGGGACGCACGTATCTGTTGCATAGGCAGGACTTGCCCACACCACAGttgcctttttctttctcagtgcCTGAGAGCCCAACTACACTGATAGTGTACGTCGGTGGACGGGGCTCTTTGTTCTTGGCCATTATACAGCCCCTCTCATTGCCTTGTTACTCTCAGCAAAGTCTGCCAGCAAGGCAAGGATAAAGTTCCATTGGCTACTGGTGATGCATTTTCATTTCTCGCTCTGAACAGATGTGGATATTCCTTTCCTCTGGATCGTTGGTTATGGAGCAGCTGTGCTTCTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU198742 lncRNA downstream 159015 18802441 ~ 18802693 (-) True G167883
TU198652 lncRNA downstream 360394 18600331 ~ 18601314 (-) False bahd1
TU198648 lncRNA downstream 364822 18596581 ~ 18596886 (-) True G167802
TU198632 lncRNA downstream 389815 18571503 ~ 18571893 (-) True G167786
TU198626 lncRNA downstream 397329 18563971 ~ 18564379 (-) True G167783
XR_003403878.2 lncRNA upstream 313665 19280278 ~ 19285841 (-) True LOC113538783
TU199245 lncRNA upstream 353225 19319838 ~ 19426679 (-) True G168304
XR_003403864.2 lncRNA upstream 474476 19441089 ~ 19449728 (-) True LOC113538592
TU199297 lncRNA upstream 527450 19494063 ~ 19498688 (-) True G168354
TU199352 lncRNA upstream 619729 19586342 ~ 19586548 (-) True G168399
XM_026933672.2 mRNA downstream 27913 18931562 ~ 18933795 (-) True LOC113538543
XM_026933673.2 mRNA downstream 27933 18931562 ~ 18933775 (-) False LOC113538543
XM_026933671.2 mRNA downstream 28031 18931562 ~ 18933677 (-) False LOC113538543
XM_026933740.2 mRNA downstream 30351 18918532 ~ 18931357 (-) True LOC113538579
XM_026933745.2 mRNA downstream 44481 18902222 ~ 18917227 (-) False pomt2
XM_026934350.2 mRNA upstream 34519 19001132 ~ 19012954 (-) False abraxas2
XM_026934349.2 mRNA upstream 34519 19001132 ~ 19012954 (-) True abraxas2
XM_026933819.2 mRNA upstream 387250 19353863 ~ 19364239 (-) True fank1
XM_026934442.2 mRNA upstream 422358 19388971 ~ 19392182 (-) True klf11b
XM_026934435.2 mRNA upstream 441104 19407717 ~ 19421925 (-) False grhl1
TU198855 other downstream 114012 18843803 ~ 18847696 (-) False LOC113538624
TU198375 other downstream 579253 18378897 ~ 18382455 (-) False gdf7
TU198371 other downstream 645501 18305743 ~ 18316207 (-) True G167566
TU198372 other downstream 645501 18305743 ~ 18316207 (-) False G167566
XR_004578948.1 other downstream 1713889 17245939 ~ 17247819 (-) False htr1b
TU199357 other upstream 623455 19590068 ~ 19594777 (-) False LOC113538862
TU199706 other upstream 1046966 20013579 ~ 20018694 (-) True srp14
TU199915 other upstream 1356151 20322764 ~ 20330744 (-) True gchfr
TU200198 other upstream 1598316 20564929 ~ 20565799 (-) True G169119
XR_003403127.1 other upstream 1766317 20732930 ~ 20733052 (-) True LOC113530231

Expression Profile