RNA id: TU199356


Basic Information

Item Value
RNA id TU199356
length 2250
lncRNA type sense_over
GC content 0.43
exon number 5
gene id LOC113538763
representative True

Chromosome Information

Item Value
chromosome id NC_047604.1
NCBI id CM018550.1
chromosome length 29376037
location 19600130 ~ 19609778 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GTGTACACGTCTAACTCGAGTCCCTCTTGTCTCACAGTGGAGCTGTGGTGTTTGCCGTCTGCTCGGAATCCAAGTGGCATTTCTGTCGATTTCAGAGAATGAGTGATAACGATGACATCGAAGTCGACAGTGATgaAGAGTCGTCGAGATTTCACCCAGTGGCAGACAAGCGAGCACACCACAACGCACTGGAGCGCAAACGCAGGGACCACATCAAAGACAGCTTTCACAGTTTACGTGACTCTGTGCCTTCTTTACAAGGAGAGAAGATGTGTGACAGCACTTTGTCAAACAGGCTTCCCGAGCTCAGATTTTAGACAAAGCCACAGAGTATATCCAGTACATGCGCCGCAAGAACCACACGCACCAACAGGACATTGATGACCTGAAGAAACAGAATGCTTTGCTGGAGCAGCAGGTCCGTGCTCTAGAGAAGGCCAAGGGGAACACGCAGCTGCAGGCCAGCTACTCATCGGACAGCAGCTTGTACACCAACCCTAAAGGCAGTGCTGTGTCGGCCTTCGATGGCGGTTCTGATTCCAGCTCCGAGTCTGAGCCTGAGGAGCCTTCCACCAGGAAGAAGCTGCGTGCGGAGCACAGCTAGACACATCCATCCTGCCTGTCAGACTCTCTCCTCCATCCTCGCCCCTTTCTGTCTCACCCTCCCACAACCTGTtccttcctctcttttctcctgtgtgttcAGAAACCTGGGGAGTGTCTCGAAAGGCCTGAAGTTTCAGGCTTTCATCTCTCAACACTGATGCCACTTTGTGCGTGGATCAAGCAAAGCTTCATTTTCCTCCAAGgcgtggcagcttggcagtttTAAGACTGCGATATTTTTCAGCCTCTTCAAGTAGTCATGCAGCAAGTAATGTAAAGCAACAAACCATTATGTTTCCCAAATGAGCTGAgatagaaaaaaggaaaataggcatttaataaaaataatttacatttgtaatatttCTAATTTTCCATGAGATATACAATGGTGCTTTTTAAAAGAACACAAGGTATGTTGGCTGTATGGTCCTTGTATGGAAGCCTGGTGTTCTCCCCAACTTGGCAAATATCTGTTgctgaatttgtttatttaatggaaTGTTGAGGCTGTATTTtgttaatgtgttgtttttgccTGAGATTATAAGTGGAAGTAGCTGGCCTCGACTTTTCCATATCCAGACTTCATAGTTTTGGAACTTGGATTTTTAATCTGCTTCGCCAAAAGAGGACAACTTTTTAATACAGGTAAACTTCCCTCCAGAAGTTGAATGTCACCATGTAGTTCAAAAGCAGTTTTTTGATGACATGTAAGTTTGTCCATTTCAGTATGTAGTATGTGGCACTGTATACTCTTAAACGTAATTGTCTTGATGGAATAACCTTCCCCGCGAACCTGCCTGCCTAGGGAATGTTTTGGTTTCATTTGAAAGAGTGTGTATGAAATATTGTGCTTTTATTCCATTCCATGGAAATTACAGGTATGTTGTACATACTGCCAACAGTTGTCTTGCAAGTTGAGGCATACCTTTACTATGAGACtccaaataaaactattttatctTCGACCTTATCAGGTGTGGTTGTGCTGGAGGGGGTgagatttcagtgtgtgtttgccgGAAAGAGATTTCGAGTTTACATCTTCCGGTTGGTATAAGAGTATTACGACAATCAAACCTTGTACAAAGTACACAAATTCCCACCTGAATTTAGATTGTGAGATATTAAGGCATCAGCATCCTCTCCGACATCATTGCAGTTCCAACTGTAAAATGcactaatatttaatttcaggtaAATGGCAGCCAGACCCAAACGTGATATTGCGAAAGCCCATGGAACCAGATTCTGAGTGTGTGGTTGAATTGTGAATGTTGAAATGTTATTATATGCATCCATGGCATTGGCCTGTAATGGCAAATTGTCAATCAAATGGCttgtattaattgtattttgtttatgtaaTGTACATTTGTTAAGCTGTGttgtgtcttttattttttatgtccatttaaaaaaaagacctaCACCTTTTACTTTTGTTAACATGTTTGGTTGGGTTAAtgaaaatatcagcaataatttgGAGTGTTTTGGGTATCTGCATAGCTCAGTGGCCTCTCTCACCCCCTCGTTGAAACTtgtccacattttgtagttttacAACCAGGACCTGAAATGGACTTGGTATTATTCGTCATGGATCTACACAGAAGAGGTGAACATATTGATCTgggg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU199359 lncRNA downstream 1232 19598368 ~ 19598898 (-) True G168405
TU199353 lncRNA downstream 11441 19587064 ~ 19588689 (-) False gpx2
TU199352 lncRNA downstream 13582 19586342 ~ 19586548 (-) True G168399
TU199297 lncRNA downstream 101442 19494063 ~ 19498688 (-) True G168354
XR_003403864.2 lncRNA downstream 150402 19441089 ~ 19449728 (-) True LOC113538592
XR_004578996.1 lncRNA upstream 69752 19679497 ~ 19680212 (-) False LOC117598328
TU199395 lncRNA upstream 69752 19679497 ~ 19680669 (-) True LOC117598328
XR_004578988.1 lncRNA upstream 73494 19683239 ~ 19684146 (-) True LOC117598314
XR_003403882.2 lncRNA upstream 77486 19687231 ~ 19688109 (-) True LOC113538910
TU199433 lncRNA upstream 154101 19763846 ~ 19765727 (-) True G168466
XM_034307868.1 mRNA downstream 4916 19589368 ~ 19595214 (-) True LOC113538862
XM_026934271.2 mRNA downstream 4926 19589368 ~ 19595204 (-) False LOC113538862
XM_034307869.1 mRNA downstream 5548 19589368 ~ 19594582 (-) False LOC113538862
XM_026934177.2 mRNA downstream 11228 19586924 ~ 19588902 (-) True gpx2
XM_026933921.2 mRNA downstream 16880 19528667 ~ 19583250 (-) False LOC113538672
XM_026934500.2 mRNA upstream 19489 19629234 ~ 19643615 (-) True LOC113538986
XM_026933769.2 mRNA upstream 163055 19772800 ~ 19775087 (-) True LOC113538599
XM_026934335.2 mRNA upstream 230626 19840371 ~ 19867165 (-) False LOC113538902
XM_026934336.2 mRNA upstream 230626 19840371 ~ 19867165 (-) True LOC113538902
XM_034308329.1 mRNA upstream 230626 19840371 ~ 19856539 (-) False LOC113538902
TU199357 other downstream 5353 19590068 ~ 19594777 (-) False LOC113538862
TU198915 other downstream 633517 18961708 ~ 18966613 (-) True G168015
TU198855 other downstream 752434 18843803 ~ 18847696 (-) False LOC113538624
TU198375 other downstream 1217675 18378897 ~ 18382455 (-) False gdf7
TU198372 other downstream 1283923 18305743 ~ 18316207 (-) False G167566
TU199706 other upstream 403834 20013579 ~ 20018694 (-) True srp14
TU199915 other upstream 713019 20322764 ~ 20330744 (-) True gchfr
TU200198 other upstream 955184 20564929 ~ 20565799 (-) True G169119
XR_003403127.1 other upstream 1123185 20732930 ~ 20733052 (-) True LOC113530231
TU200304 other upstream 1204816 20814561 ~ 20817216 (-) False grem1b

Expression Profile