RNA id: XM_026934114.2


Basic Information

Item Value
RNA id XM_026934114.2
length 1585
RNA type mRNA
GC content 0.45
exon number 5
gene id LOC113538763
representative False

Chromosome Information

Item Value
chromosome id NC_047604.1
NCBI id CM018550.1
chromosome length 29376037
location 19600130 ~ 19609778 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GCGCGCACTTGGCGGTGTCGCTCAGTCACGTGTACACGTCTAACTCGAGTCCCTCTTGTCTCACAGTGGAGCTGTGGTGTTTGCCGTCTGCTCGGAATCCAAGTGGCATTTCTGTCGATTTCAGAGAATGAGTGATAACGATGACATCGAAGTCGACAGTGATgaAGAGTCGTCGAGATTTCACCCAGTGGCAGACAAGCGAGCACACCACAACGCACTGGAGCGCAAACGCAGGGACCACATCAAAGACAGCTTTCACAGTTTACGTGACTCTGTGCCTTCTTTACAAGGAGAGAAGGCTTCCCGAGCTCAGATTTTAGACAAAGCCACAGAGTATATCCAGTACATGCGCCGCAAGAACCACACGCACCAACAGGACATTGATGACCTGAAGAAACAGAATGCTTTGCTGGAGCAGCAGGTCCGTGCTCTAGAGAAGGCCAAGGGGAACACGCAGCTGCAGGCCAGCTACTCATCGGACAGCAGCTTGTACACCAACCCTAAAGGCAGTGCTGTGTCGGCCTTCGATGGCGGTTCTGATTCCAGCTCCGAGTCTGAGCCTGAGGAGCCTTCCACCAGGAAGAAGCTGCGTGCGGAGCACAGCTAGACACATCCATCCTGCCTGTCAGACTCTCTCCTCCATCCTCGCCCCTTTCTGTCTCACCCTCCCACAACCTGTtccttcctctcttttctcctgtgtgttcAGAAACCTGGGGAGTGTCTCGAAAGGCCTGAAGTTTCAGGCTTTCATCTCTCAACACTGATGCCACTTTGTGCGTGGATCAAGCAAAGCTTCATTTTCCTCCAAGgcgtggcagcttggcagtttTAAGACTGCGATATTTTTCAGCCTCTTCAAGTAGTCATGCAGCAAGTAATGTAAAGCAACAAACCATTATGTTTCCCAAATGAGCTGAgatagaaaaaaggaaaataggcatttaataaaaataatttacatttgtaatatttCTAATTTTCCATGAGATATACAATGGTGCTTTTTAAAAGAACACAAGGTATGTTGGCTGTATGGTCCTTGTATGGAAGCCTGGTGTTCTCCCCAACTTGGCAAATATCTGTTgctgaatttgtttatttaatggaaTGTTGAGGCTGTATTTtgttaatgtgttgtttttgccTGAGATTATAAGTGGAAGTAGCTGGCCTCGACTTTTCCATATCCAGACTTCATAGTTTTGGAACTTGGATTTTTAATCTGCTTCGCCAAAAGAGGACAACTTTTTAATACAGGTAAACTTCCCTCCAGAAGTTGAATGTCACCATGTAGTTCAAAAGCAGTTTTTTGATGACATGTAAGTTTGTCCATTTCAGTATGTAGTATGTGGCACTGTATACTCTTAAACGTAATTGTCTTGATGGAATAACCTTCCCCGCGAACCTGCCTGCCTAGGGAATGTTTTGGTTTCATTTGAAAGAGTGTGTATGAAATATTGTGCTTTTATTCCATTCCATGGAAATTACAGGTATGTTGTACATACTGCCAACAGTTGTCTTGCAAGTTGAGGCATACCTTTACTATGAGACtccaaataaaactattttatctTCGACCTTA

Function

GO:

id name namespace
GO:0030097 hemopoiesis biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0071339 MLL1 complex cellular_component
GO:0003677 DNA binding molecular_function
GO:0046983 protein dimerization activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU199359 lncRNA downstream 1900 19598368 ~ 19598898 (-) True G168405
TU199353 lncRNA downstream 12109 19587064 ~ 19588689 (-) False gpx2
TU199352 lncRNA downstream 14250 19586342 ~ 19586548 (-) True G168399
TU199297 lncRNA downstream 102110 19494063 ~ 19498688 (-) True G168354
XR_003403864.2 lncRNA downstream 151070 19441089 ~ 19449728 (-) True LOC113538592
XR_004578996.1 lncRNA upstream 69723 19679497 ~ 19680212 (-) False LOC117598328
TU199395 lncRNA upstream 69723 19679497 ~ 19680669 (-) True LOC117598328
XR_004578988.1 lncRNA upstream 73465 19683239 ~ 19684146 (-) True LOC117598314
XR_003403882.2 lncRNA upstream 77457 19687231 ~ 19688109 (-) True LOC113538910
TU199433 lncRNA upstream 154072 19763846 ~ 19765727 (-) True G168466
XM_034307868.1 mRNA downstream 5584 19589368 ~ 19595214 (-) True LOC113538862
XM_026934271.2 mRNA downstream 5594 19589368 ~ 19595204 (-) False LOC113538862
XM_034307869.1 mRNA downstream 6216 19589368 ~ 19594582 (-) False LOC113538862
XM_026934177.2 mRNA downstream 11896 19586924 ~ 19588902 (-) True gpx2
XM_026933921.2 mRNA downstream 17548 19528667 ~ 19583250 (-) False LOC113538672
XM_026934500.2 mRNA upstream 19460 19629234 ~ 19643615 (-) True LOC113538986
XM_026933769.2 mRNA upstream 163026 19772800 ~ 19775087 (-) True LOC113538599
XM_026934335.2 mRNA upstream 230597 19840371 ~ 19867165 (-) False LOC113538902
XM_026934336.2 mRNA upstream 230597 19840371 ~ 19867165 (-) True LOC113538902
XM_034308329.1 mRNA upstream 230597 19840371 ~ 19856539 (-) False LOC113538902
TU199357 other downstream 6021 19590068 ~ 19594777 (-) False LOC113538862
TU198915 other downstream 634185 18961708 ~ 18966613 (-) True G168015
TU198855 other downstream 753102 18843803 ~ 18847696 (-) False LOC113538624
TU198375 other downstream 1218343 18378897 ~ 18382455 (-) False gdf7
TU198372 other downstream 1284591 18305743 ~ 18316207 (-) False G167566
TU199706 other upstream 403805 20013579 ~ 20018694 (-) True srp14
TU199915 other upstream 712990 20322764 ~ 20330744 (-) True gchfr
TU200198 other upstream 955155 20564929 ~ 20565799 (-) True G169119
XR_003403127.1 other upstream 1123156 20732930 ~ 20733052 (-) True LOC113530231
TU200304 other upstream 1204787 20814561 ~ 20817216 (-) False grem1b

Expression Profile