RNA id: XM_034307868.1


Basic Information

Item Value
RNA id XM_034307868.1
length 1938
RNA type mRNA
GC content 0.40
exon number 7
gene id LOC113538862
representative True

Chromosome Information

Item Value
chromosome id NC_047604.1
NCBI id CM018550.1
chromosome length 29376037
location 19589368 ~ 19595214 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GCACATTTTTCTCCTGTTCTGGGGCATATTATTATAAACTGCTTAGTCAACCAGACTTTATGGCATTTTGTCATTTATAGCATTATTTAAGGGCGTCCCTTAGTGGGTTAAATTATGCCTAAATAAACTAAGAACCCTGCACAAATTTGCTTGAAAGAAGGAAAACTAGCCTTGTCCTTATCTATGTATCAGTAATACATATTGGAGACTATACTACATATGTTTATATGGTTTAGCATAGCTTATCTTTTCCAAGGCAGCCATTCATTTTAAGCTGAAGGCTATTTGACATTTTGCTTTATCTGGCTGTAGCAAGAGAATGACATGGGTTTGACcctgaaaaatgaatgaataaaaggtGATATCATTAAAAGATGAAGTTGAGGACACTTACAGAGCAGACTGTCATGGCTGCTCTGAGGCTGGAGGGAGAAaactactgaagaaaaaaaaaacaatacaggaGAGGCTCTTTTCCTTCCTCTCGGCTACTTTTAGGAGTGTGACTGATGGTGATGAGTGAAGCTTAGCTTAATTACAGGAAATATGAAAGAATACGGCTCTTGAACAGCAGTTCTCGACGAGCACTTGGCTTGTGAACGCGTTTGTCAGGAACTTGGTCCACGCCATGGCGAAGCAATACGACGTCCTCTTCAGACTGCTGCTGTTAGGAGACTCTGGTGTGgggaaaacctgtttactctgCCGCCTCACCGACAACGAGTTCCTGTCGCCGCACATTTCCACTATCGGGGTggatttcaaaatgaaaacaatagaAGTCAATGGAATCAAAGTGAGAATACAGATATGCTTTGCTCGCGTAACTGTCTTCTACAGGGACACAGCTGGACAGGAGAGGTACCAAACTATTACGAAGCAATATTACAGACGAGCACAGGGAATTTTCCTTGTATACGACATTACTAGCTCCCTTTCCTTCCAACATATAATGAAGTGGATTAGTGACGTTGATGAGTATGCACCACACATAGTGCAGAAGATTCTTGTTGGGAACAAACATGATGAGGAGCATCGAAGACAAGTGACCACAGAGCAGGGGAACAAGCTTGCTAAGTCTTATGGTATGGATTTCTTGGAGACAAGCGCCTTTACCAACTATAACATCAACAAGGCATTCATTCGGATGACCGAGCTGGTGCTGGAAGCCAACAAGGAGGAGTTGGATAGTGCGCTGCCATCCAACAACGATGATCTCGGCGCTACGGAAACAGAGCAGGAGCATGAATATTCCACCTGTTCatgttaataaagtgttaaagcaTATTTTTCAGCTGCTACTGATGTCAGTAAGGCAGTTACGAAAATCATTTCAGCAATGTCATTGTATTTCTGAAACGCTTTGTAATCTCCCTCATTACTGCATCTGTATAATGTGTGCTTTGTCTCATTGCTTGATCCTAGATGCAAGAATGATCAGTAAACATTTGGAAAAAGCACTTCCGTTTGTGTCTCACTAGGGGGCAGTCATCTACGaatcatttttttgttcatcacTGCAAACAACTGTTCAGCTAAAATGCATCAAATTGCTGCTTTGACCTAATTTTGATATTTAGAGCCATTTAGAGTTGCAGCAGCTTGTGACATAAACACGGGCAGAGCTGTAAGGTTGATCAAGGACTTGTGATACATTTGACCACTATTCCATCGAACTGACAGGAGAAAATCCTCCATCCCACCCATATGAACCACAGAATTGGATAATGGGGGTGTGCTGACCTCATTGTAGTGCTTACTTcttaaacagagagagagattttcttTTGGCATTAAAATGACACTGAATTTAGAATTTGATTCCATTATTAgtgtaaaaactaaaaatatattatatttgctGTCAAATCTGTATGTCTACTAAAGGATTGTATTGTATAAATAAGTTGTAAAGCTTTGTATATGATCTAGAGCTAT

Function

GO:

id name namespace
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0015031 protein transport biological_process
GO:0005525 GTP binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU199353 lncRNA downstream 679 19587064 ~ 19588689 (-) False gpx2
TU199352 lncRNA downstream 2820 19586342 ~ 19586548 (-) True G168399
TU199297 lncRNA downstream 90680 19494063 ~ 19498688 (-) True G168354
XR_003403864.2 lncRNA downstream 139640 19441089 ~ 19449728 (-) True LOC113538592
TU199245 lncRNA downstream 162689 19319838 ~ 19426679 (-) True G168304
TU199359 lncRNA upstream 3154 19598368 ~ 19598898 (-) True G168405
TU199356 lncRNA upstream 4916 19600130 ~ 19609745 (-) True LOC113538763
XR_004578996.1 lncRNA upstream 84283 19679497 ~ 19680212 (-) False LOC117598328
TU199395 lncRNA upstream 84283 19679497 ~ 19680669 (-) True LOC117598328
XR_004578988.1 lncRNA upstream 88025 19683239 ~ 19684146 (-) True LOC117598314
XM_026934177.2 mRNA downstream 466 19586924 ~ 19588902 (-) True gpx2
XM_026933921.2 mRNA downstream 6118 19528667 ~ 19583250 (-) False LOC113538672
XM_026933922.2 mRNA downstream 6118 19528667 ~ 19583250 (-) True LOC113538672
XM_026933923.2 mRNA downstream 29403 19528667 ~ 19559965 (-) False LOC113538672
XM_026933699.2 mRNA downstream 64500 19498748 ~ 19524868 (-) False LOC113538555
XM_026934113.2 mRNA upstream 5584 19600798 ~ 19609778 (-) False LOC113538763
XM_026934114.2 mRNA upstream 5584 19600798 ~ 19609774 (-) False LOC113538763
XM_026934500.2 mRNA upstream 34020 19629234 ~ 19643615 (-) True LOC113538986
XM_026933769.2 mRNA upstream 177586 19772800 ~ 19775087 (-) True LOC113538599
XM_026934335.2 mRNA upstream 245157 19840371 ~ 19867165 (-) False LOC113538902
TU198915 other downstream 622755 18961708 ~ 18966613 (-) True G168015
TU198855 other downstream 741672 18843803 ~ 18847696 (-) False LOC113538624
TU198375 other downstream 1206913 18378897 ~ 18382455 (-) False gdf7
TU198371 other downstream 1273161 18305743 ~ 18316207 (-) True G167566
TU199706 other upstream 418365 20013579 ~ 20018694 (-) True srp14
TU199915 other upstream 727550 20322764 ~ 20330744 (-) True gchfr
TU200198 other upstream 969715 20564929 ~ 20565799 (-) True G169119
XR_003403127.1 other upstream 1137716 20732930 ~ 20733052 (-) True LOC113530231
TU200304 other upstream 1219347 20814561 ~ 20817216 (-) False grem1b

Expression Profile