RNA id: XM_034308156.1


Basic Information

Item Value
RNA id XM_034308156.1
length 7308
RNA type mRNA
GC content 0.38
exon number 16
gene id LOC113538915
representative True

Chromosome Information

Item Value
chromosome id NC_047604.1
NCBI id CM018550.1
chromosome length 29376037
location 19722780 ~ 19766581 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TCTCTACTAGCTAGTACGGGTAGTAAACTAGTACAGAGGACTGCTTGAAGTGTGTCCTCAGGCCTCAGTGGTGCACGTGCAGGCGTGTTAGCCTGAGTTTCCTGAGCTCATGGCCTACTACATCCAAGgtaAAATGGGAAATCTGTGGGCTAACACAGGCCTGTATGATGATACCAAATATTCATTCATCGATCCGGATTACCACATAAACATAGAggattattttcaaaatgttgacATCATTGAAAAGAGCCCCACAGACATGATGCTGGTGAAGAAGGAGCAGAAAGATGCCGAGCTGGATAGGAAGATTGAGGCATTGAGAAAGAAGAATGAGGCCCTTATGAAGCGCTATCAGgaggtggaggaggataAGAAAAGGGCGGAGCAGGAGGGCATGGCAATGCAGAGCCGCAGAGGGAAGGTTGAGGACCTGACCATCACCATCAACAAGTCCCCCACTGAGAAGCGTGTTGTAACCAAGAAGGGTTTGGGAGATGCAATTCCTAAAGGGGTGCAGAACCAGGAGGATGTGTCCAACGTTTTCAGTGCCGGCCGTGGTAAAAGGAGGCAGCTTCTAGTCACCGCCCCAGGAAACACTAAGGGGAAGAGGGTGGTCAGTGAAAGGGTGGAGAAGAGCTGTCCGGCTGGTCTAGCAGGGATAAAACACTCTACTGATGGCAGGGGGGAGCCGCTGGATACGAATGCAGGAAGAAGGGACTGTCCAAAAAGCCAGGTTGGAAAGAAGCAGGAACGAAAGTGTCGAGTTGAGTGTGCTCATCATGGATTCACCGAGTATAACTCCTATCCCCAGCAAACCGAAGTGCTGACTGATCTCAGCATCCCCACGTCCAGCGAAGAGCAGCTGGAGTACCTGCgctggaaaaaagagagggaagaaaTCGACCGAGAACGTGTGGCTCGGCACAGAAACTCCCAGGGCCAGTGGAAGAGAGCCTGGGACATGGACAAACCGGAGCTTACGTTTTCTGAAAAAGGCACAGCAGAGCGAGGTACACAGAGCAGAGGTGGCAGAAATGCTAGAAGAGGACATTCCAGACCTTCCACAACAGAATCACGAGTTGGACAGCGTGATAAGAGAGGAAAGAATGTTCCTGTGGTTGGCAGTAAAGTGAAAGGAAAGGACCGTTTGACCGGCCGAGCCAGGAGatgggACGCTAAAGAGGAAACAGAGCAATTACAGGTGGGTCCAGACACGAGTTTGGAGGAGTTTTTGGAGGAGCTGGATGCTCTGTGTGATCCTGAGGTCAACAGTAACAGTCCAGACACCGAGACCCAGGAAGCAGAAtccagtgtgtctgtggagACAGCTACAACCACTGGTTATGTTTCTGCAGATACAAAACTAGAGAGTCAGCTTATTTCTACAGACTCATCCAACAAGAACACCTCCATCTCTAGAGGAGCTGAGAAGAAGGTCCGTTTTTCAGAAGACCTCATTCAGGGAGCTTTTGAGAAGAACTCGAACACTGATAAGACAGAGATCAAAGCCGGTTCTTTAAAAAACATGCCACAGACCAAAACAGCGCTTGGAGAGCAGGATGCCCAACAGGACTTGTTTCATGATCAGGAAGGAATGAAAAACAACCAGGAGCAAAAGGCCACAGGCATTCTTCTCACAGATCCTCAAGCCAAAACACCAGGCCAGTTTGATTCCCAGGAGACAAGCATTAAAGAACTGAAACCAACACCTGAGAGCTTCCTAAAGGAAGAAACTGAGAGCAAATCTAAAGAATCACCTTGTGATAGTGTCGGTTCTCAAAACGGCACTGACGCCACAGCTTCTACTGAACAGAACCTGCTTCACACGATGGAGCCTCTGAAAAATAACACCTCCAGAAATACTGACGAGCTgattgactccagtctctcagtATTGAGTTTGGAATCTGGAGATACGCTGCCTGTCCACAGCACCAGCACTGAAAAGGTTCTAGATGACTGAAAACCTGAGAAGAATGGAAAAGATATGATTTTAGCAAGTTAGCAACAGGCTAGAGAGAATGGGAAAATAGTTTAGATGGTGTGTTTCGTGGTCACATCTGATTGAGATGGAAGACAGAaaccaaacaaagaaaaaggctGCACTGCAGTTTGCCTGTTTTAGTCTGTTCCAGCTTCAGGAATGGTTAGTTTGAGAACTAATAGAAATTACCACCATGATGTAGTAGTGGGCAGTATGGCAGTTCTAAGATCATGACTCACTTTTAATGATGCTCAGTGGCTGTTATTATGTCCATATACACAAACTAACAGCTAagtatctgtatttaaaaaaaaaaatgtattatggcTACTAAAGATGCCTGCTGTCATTCAGAAAGAGGGAGAGTGCGCAGTACTGAAGCAGTCCTCTGTGTTGATTGGCTTACTTGCTGGTCTTTCACATTAAAAACCTGAACAGATTTGGATAAATCAGGGTGTGATGTTGGCTTGAGCATACATGTTAGCACCCATCATGATCAgcataaaaaattttattttaaaataagtgtGCTATTTATTTCATGGTGAACCACTCAATTCAATGGTGAAGTGGTTTGCTCAACAGCAAGCTTACATTTCATTTGGTTTCTCTTTATGTgtgattccatgattgtggtgccatttgtgtcccactattattaaattttcagatatgtatgtaaagaaaagttaaagagattttatttatgggtaaagtgtccttcacaacaagcTATATGcatatttctgatattttttattttttgttactttaCTTTTCAGAGGCGGAACAATCATAAACTAAACAATCTAAactaaaatgggaaataaaataataccagTATTTAAAAAGCATCTGTCAATATTACTCGACCATGTATCACATATTCTTAGAATTAAagtttatatgtgtatacagACAACTGCATAGAGTTAACAGCAATAAAGACTGGTTAAagacatacatatacatatacaggaTAACAGGGAAAGCTTGTCAGTCTTGACCAGTAAACAAAAACCATTTCTCCCAATTTCTTTCAAAATGTCCCTTTTATGTCTCAACATATGGGTTAGCCATTTTCATGTTATAATTTTCTTGCATATTTCAGATTActgaaaacattaataaaaccagCATTTTTGGCTGTCCTAGCCcgctataactacactttaccctAAAAAATATCATacttaaaatattgtttttgcaTTAGTGTGCACATCCATTTGACATCccatgcttgaaacatccttttccacgAGTCATCCGTTAcagattatgaaaaatgtactttaTGTATTTTAGTTACGTCTCACAATATTCATTCACCCTTGATACCCGAACATATTCATCTCTacgaaatatttggaatatatCCAAGTtgcatgttcaacaggaagttgcatcatccaaatttcctgaagatcaaaAAGATTATTCTGtttccttaatttttttctagTGATATTGTGGCATTGAATGAAGAGGTCACTTTAAAGTACAGCACTGTTACAAATTGTAGGTCCAATTATTAgcttaaaaaattattttaagtaaTTCATTAAAATTTCCCTAATGTAGGGTGACCATACGTCCTCCTTTTCCAATGCATTTCATCTAAATTTCGTAAAATATCCGGGgttttgctttgctttcagGTCTACATTTTCTACAATTGCCACACACTCTGTGTGCATATTTGCATCGCTTTAACCCAATTCTTTAGGTTCCACCTTTTCGCCCTCCACAATTGGTCGATTGTGTACAAGCCCTGCATGCAACCATTGGTCAAACTGCTTCTCAGTCATTACCCTCAGCGTGTGTGCAGGAAGCGCCACACCACCACAACCAGGGACAGATGATTGGTTGAGAAGAGCAGTGCATGGAGCCTGacacaaatgtaaatacacagatgaattacagaaaatattCCTGTTTACGTCTCGGTTGGGAAGTGGACCAGATATTCTAAAAGGGGTCTAAAAGCATTGAATTTCATTCAGAACTGCTGAAAATTGCACATATTTTCTTTGCTATTCTCTGAAACAAGTCTAGTGAAgtactggatttttttaaaatggcaactgatttgattatattttattctatggtcaataaaagaaaaataatatataaaaagtggtaaaacttttttttttttgcttttatttgtttttatttgtaagagACATTAATTGAATCGAAAGGAGattatttggccatataatTTATTGAGGCATTTGTTAAGACTAACCACAATCTCCCACCCACCACGAGTGCCCGTGTGCCCAACGCCACCATTCCTAGTGCCCTAGTGTCCTCTTTTTTGAAAACCAAAATATGGTCACCCTACATAATGtcctcatgccattagcatAGATCCTAGTTAAccatatatttttgtgtttgctaattctgtgcttaaaaaaaaaaaccctcaaccCTTCATCTTTACATTACATCTTCAtcaaagaaaccttgtaaaagtGAGATTGTTGCCTAAGAATGGGGGCTAAATGGCACCCCAATCATGAAATCACCTTTATCCTTTTTCTGCATAAAGTGCATAAAGCATTCTGAAAGAAATCATAAATGTCTGTTGTTTATTCAGCAGGGAATCAAAGATACTAAAAATGATCAGTTAATCATTACATCAGTATACCATGATATGTACCGATCATTTTAATATACACTGTGATATAAATTTTTGGCCGTACTGCCCACTACTTCCATGAGATTACTACCTACTgggtttaacacattttgctaaTGTGTAGGCCATAATGATGACTTGAGTACTGTGTATTTTGGCTAAAAGAAAAGTTaggaatgaggaaaaaaggaaggtGCCTGCAAGTCATTGAAAGATATTGGATCTAGATTAGATCTTATGAGGTAAATGTGTAGCGAATACAAGGAAATTACTAATACTAGGGGTGGATGATACAGCTTAAACTAGGGTTGACAATGATCACAATACATCAcagtggactttttttttttttttttttttttttttaggagaagCAGTCTCTGACAAAaaacgaaaagaaaaaaaaaacaagagtttTTAAGTCTTGTGGAATTTTCTCAATCATGGGTGTTTCTCACACATCATTGGTTGGTATTAAAAGTGATTTTGCAATCTTGGTACTCAATCATCTTTATTAGGAGTTATCATAAAGAGGTTTTGTTTCTATCTGAGTGTGTTATGGGAGAAAAAGTCCTGGTTAGGTAAATTTATATGTGAAATGCTGAAGTCTTAGTATTGAGGCTGTACTTCAGCTGAGAAACTGGAAATGATAGTGATGATGTGGATGTGTTAGGATGATGTGACTAGGTGTAAATTAGGAAAAGTGTCACAGAAATGTACAAATGAGTAACCCTGAAGCTTTCCCTTTCATCCATAAATCACACATATTGCAATATTACCCAAGACGAGAGGAAACCAATGATCATTGCTGTTTTTCCAGACTTGCTTTTAAAGGCGCTGTGTGAggctgagtcaaatgaaaaccttgtAAGTGCAACATAAATTAGAGAaacaaacaggtttttttttctagatgaaTCCAGACACTCGTTAAGCACAGGAACACTTGtgttacacacaaaaaaaaaacagattaggTAGAACAATGATGCACCTTTGTGAAACCTATTggtaataaatgattaaaaaaaaaaaagaatttcatttgACTCACACTGGTGCATTTATAATTTGTCATTTACAGCTAACATTAAGTCTATCAGTAGCAGACAGCTAGATAACTTTTATAGTTATTTGACATCAGTTTGAGCTTTGTGTAGCACATATTAAACCCTCACTGATTCCCATTTTTGTGCATGatcttattaatttattatagtattacatttacacttcTTTGATACTCCCGTCACCCTCTTTTTGACTGTGTAACTGACATAAATTCTAGCCAATCACATTTTAACAACTGGGAAACAGACACATGATTGAGAAATGCCCACTTTTCTTGCACCAAAACTGCCCACTACTAGTTGCTACTGTTTACTGAAATGCCTATCAGCCTAGCTGTTGTGGTTTGAAGGAAGACGCATTATGCTAAAAGCACTACGCAGCATATTGAATGTCTAAATTAAGTTTTTTAAAGGATTATTTGACACATTTTAATGCACAAAAATAAGCATACATACTCACGGCAAATCAACCACACGATCCAAATTGtgtacatgcatacacacatatacagacttATATACCGGATACATCAATCACATGCTactgatttttgtatttttgtatgcaTATATTTTGGGAAGTGACATTTTGTGCAAAGACAGTTCAAGCAATGTTTACTGCTTTTAAAGTATGTTTATAAGCactttattttgtataaatgcTCGCTATGTTCAGAAATGTTACCGTTGAATCTGataaacactgtacattgaAATACAAACCCCTTTAAGACTGAACACTTCTGTCACATAAAATATTTGAAGTCCAGAATTGATTTGCTTATGCAGAATTTTGTTCAGTTGTGAAGaatgaaaaaatgcattttgtatttGCACATATTGTAAAATAGGCCTGAGGCAATTTGTGTAGAATAACGCAATACTTCTTTTGACTTATGTTTATAATACTAATATGAATAATTGGGTACGAAGAAGGAAAACTCAACCTGGTTCAAAAGTCAAGTTGAAAATATCTGTACCTATTTATAGCATTAAAAATTgcctaataatataaaaatgttaatatttattaggGAAAATTATTACCATTATAGAGTGATTGGGTCCTGCATATTTCAATGACAATAtaggggtgtcccaaaagtctccatacatagggcaaattaacactttttagcaaaatgcctaatgtgttaaatgtgttaattcCCCTGTATATAGAGacctttgggacaccctgtattgtTCTAGGCCTTTTTCTGAACATTTCATTATTACTAAATATAAGTAATGCTTTTGCTAActtaaatctgaaatatttctgttcaCTTGAATGTTGcaattttctgctttatttaaGCATGGATTAAGTgactaatttaatatttaattttgtacatCATGCTGTAATTAATATATTGCCACTGTCACTTTGTGTCCAACagaatttgaaatgaattttgtgtactacatactgtattaaACTTATTTTGGTTCACATTTCTGTACATGATTGTATTTATTAGCTCAAGAATTATGTTTTcatgtctttgtttttgtcattgtcATAAGAGTGTAACATACTGAGTAGTTCAACAGAACTGTCCaaataaaaaattctgaatTAGGGGAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU199117 lncRNA upstream 36319 19682976 ~ 19687591 (+) False G168191
TU199143 lncRNA upstream 126943 19596423 ~ 19596967 (+) True G168207
TU199088 lncRNA upstream 199055 19523154 ~ 19524855 (+) True G168175
TU198910 lncRNA upstream 745434 18977016 ~ 18978476 (+) True G168011
TU198789 lncRNA upstream 882300 18839609 ~ 18841610 (+) True G167913
TU199473 lncRNA downstream 6309 19772890 ~ 19774666 (+) True G168504
TU199571 lncRNA downstream 121346 19887927 ~ 19888154 (+) True G168585
TU199619 lncRNA downstream 221067 19987648 ~ 19987870 (+) True G168630
TU199621 lncRNA downstream 252180 20018761 ~ 20019038 (+) True G168632
TU199622 lncRNA downstream 252576 20019157 ~ 20020371 (+) True G168633
XM_034308225.1 mRNA upstream 54363 19646283 ~ 19669547 (+) True mthfd1b
XM_034308207.1 mRNA upstream 93790 19620847 ~ 19630120 (+) False LOC113538896
XM_034308209.1 mRNA upstream 93790 19620859 ~ 19630120 (+) False LOC113538896
XM_034308208.1 mRNA upstream 93790 19621338 ~ 19630120 (+) False LOC113538896
XM_026934326.2 mRNA upstream 93790 19621347 ~ 19630120 (+) True LOC113538896
XM_026933767.2 mRNA downstream 11987 19778568 ~ 19809259 (+) True plcb2
XM_026934292.2 mRNA downstream 70677 19837258 ~ 19839847 (+) True LOC113538872
XM_026933703.2 mRNA downstream 113154 19879735 ~ 19886509 (+) False zfyve19
XM_034307819.1 mRNA downstream 146762 19913343 ~ 19922486 (+) False LOC113538658
XM_034307817.1 mRNA downstream 146762 19913343 ~ 19922486 (+) False LOC113538658
TU199111 other upstream 36319 19674913 ~ 19687591 (+) True G168191
TU199113 other upstream 36319 19679315 ~ 19687591 (+) False G168191
XR_004578955.1 other upstream 1351939 18330468 ~ 18371971 (+) False ldah
XR_003403895.1 other upstream 1403834 18319970 ~ 18320076 (+) True LOC113539017
XR_004579004.1 other upstream 1797890 17925706 ~ 17926020 (+) True LOC117598336
XR_004578946.1 other downstream 113154 19879735 ~ 19886509 (+) True zfyve19
XR_004578926.1 other downstream 147052 19913633 ~ 19922401 (+) True LOC113538658
XR_004578927.1 other downstream 147052 19913633 ~ 19914709 (+) False LOC113538658
TU199644 other downstream 275896 20042477 ~ 20042935 (+) True G168650
XR_004578908.1 other downstream 755014 20521595 ~ 20531222 (+) False LOC113530103

Expression Profile