RNA id: TU199433


Basic Information

Item Value
RNA id TU199433
length 1882
lncRNA type inter_gene
GC content 0.34
exon number 1
gene id G168466
representative True

Chromosome Information

Item Value
chromosome id NC_047604.1
NCBI id CM018550.1
chromosome length 29376037
location 19763846 ~ 19765727 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GTGTTCAGTCTTAAAGGGGTTTGTATTtcaatgtacagtgtttatCAGATTCAACGGTAACATTTCTGAACATAGCGAgcatttatacaaaataaagtGCTTATAAACATACTTTAAAAGCAGTAAACATTGCTTGAACTGTCTTTGCACAAAATGTCACTTCCCAAAATATAtgcatacaaaaatacaaaaatcagtAGCATGTGATTGATGTATCCGGTATATaagtctgtatatgtgtgtatgcatgtacaCAATTTGGATCGTGTGGTTGATTTGCCGTGAGTATGTATGCTTATTTTTGTGCATTAAAATGTGTCAAATAATCCTTTAAAAAACTTAATTTAGACATTCAATATGCTGCGTAGTGCTTTTAGCATAATGCGTCTTCCTTCAAACCACAACAGCTAGGCTGATAGGCATTTCAGTAAACAGTAGCAACTAGTAGTGGGCAGTTTTGGTGCAAGAAAAGTGGGCATTTCTCAATCATGTGTCTGTTTCCCAGTTGTTAAAATGTGATTGGCTAGAATTTATGTCAGTTACACAGTCAAAAAGAGGGTGACGGGAGTATCAAAgaagtgtaaatgtaatactataataaattaataagatCATGCACAAAAATGGGAATCAGTGAGGGTTTAATATGTGCTACACAAAGCTCAAACTGATGTCAAATAACTATAAAAGTTATCTAGCTGTCTGCTACTGATAGACTTAATGTTAGCTGTAAATGACAAATTATAAATGCACCAGTGTGAGTcaaatgaaattcttttttttttttaatcatttattaccAATAGGTTTCACAAAGGTGCATCATTGTTCTAcctaatctgttttttttttgtgtgtaacaCAAGTGTTCCTGTGCTTAACGAGTGTCTGGAttcatctagaaaaaaaaacctgtttgttTCTCTAATTTATGTTGCACTTacaaggttttcatttgactcagccTCACACAGCGCCTTTAAAAGCAAGTCTGGAAAAACAGCAATGATCATTGGTTTCCTCTCGTCTTGGGTAATATTGCAATATGTGTGATTTATGGATGAAAGGGAAAGCTTCAGGGTTACTCATTTGTACATTTCTGTGACACTTTTCCTAATTTACACCTAGTCACATCATCCTAACACATCCACATCATCACTATCATTTCCAGTTTCTCAGCTGAAGTACAGCCTCAATACTAAGACTTCAGCATTTCACATATAAATTTACCTAACCAGGACTTTTTCTCCCATAACACACTCAGATAGAAACAAAACCTCTTTATGATAACTCCTAATAAAGATGATTGAGTACCAAGATTGCAAAATCACTTTTAATACCAACCAATGATGTGTGAGAAACACCCATGATTGAGAAAATTCCACAAGACTTAAaaactcttgttttttttttcttttcgtttTTTGTCAGAGACTGcttctcctaaaaaaaaaaaaaaaaaaaaaaaaaaagtccactgTGATGTATTGTGATCATTGTCAACCCTAGTTTAAGCTGTATCATCCACCCCTAGTATTAGTAATTTCCTTGTATTCGCTACACATTTACCTCATAAGATCTAATCTAGATCCAATATCTTTCAATGACTTGCAGGCaccttccttttttcctcattcctAACTTTTCTTTTAGCCAAAATACACAGTACTCAAGTCATCATTATGGCCTACACAttagcaaaatgtgttaaacccAGTAGGTAGTAATCTCATGGAAGTAGTGGGCAGTACGGCCAAAAATTTATATCACAGTGTATATTAAAATGATCGGTACATATCATGGTATACTGATGTAATGATTAACTGATCATTTTTAGTATCTTTGATTCCCTGCTGAATAAACAACAGACATTTATGATTTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_003403882.2 lncRNA downstream 75737 19687231 ~ 19688109 (-) True LOC113538910
XR_004578988.1 lncRNA downstream 79700 19683239 ~ 19684146 (-) True LOC117598314
TU199395 lncRNA downstream 83177 19679497 ~ 19680669 (-) True LOC117598328
XR_004578996.1 lncRNA downstream 83634 19679497 ~ 19680212 (-) False LOC117598328
TU199356 lncRNA downstream 154101 19600130 ~ 19609745 (-) True LOC113538763
TU199462 lncRNA upstream 1027 19766754 ~ 19766953 (-) True G168493
TU199596 lncRNA upstream 121588 19887315 ~ 19887830 (-) True G168608
TU199660 lncRNA upstream 157378 19923105 ~ 19924187 (-) True G168661
TU199664 lncRNA upstream 174089 19939816 ~ 19940040 (-) True G168665
TU199749 lncRNA upstream 333400 20099127 ~ 20100572 (-) True G168747
XM_026934500.2 mRNA downstream 120231 19629234 ~ 19643615 (-) True LOC113538986
XM_026934113.2 mRNA downstream 154068 19600798 ~ 19609778 (-) False LOC113538763
XM_026934114.2 mRNA downstream 154072 19600798 ~ 19609774 (-) False LOC113538763
XM_026934271.2 mRNA downstream 168642 19589368 ~ 19595204 (-) False LOC113538862
XM_026933769.2 mRNA upstream 7073 19772800 ~ 19775087 (-) True LOC113538599
XM_026934335.2 mRNA upstream 74644 19840371 ~ 19867165 (-) False LOC113538902
XM_026934336.2 mRNA upstream 74644 19840371 ~ 19867165 (-) True LOC113538902
XM_034308329.1 mRNA upstream 74644 19840371 ~ 19856539 (-) False LOC113538902
XM_026933817.2 mRNA upstream 107695 19873422 ~ 19879335 (-) True bub1bb
TU199357 other downstream 169069 19590068 ~ 19594777 (-) False LOC113538862
TU198915 other downstream 797233 18961708 ~ 18966613 (-) True G168015
TU198855 other downstream 916150 18843803 ~ 18847696 (-) False LOC113538624
TU198375 other downstream 1381391 18378897 ~ 18382455 (-) False gdf7
TU198372 other downstream 1447639 18305743 ~ 18316207 (-) False G167566
TU199706 other upstream 247852 20013579 ~ 20018694 (-) True srp14
TU199915 other upstream 557037 20322764 ~ 20330744 (-) True gchfr
TU200198 other upstream 799202 20564929 ~ 20565799 (-) True G169119
XR_003403127.1 other upstream 967203 20732930 ~ 20733052 (-) True LOC113530231
TU200304 other upstream 1048834 20814561 ~ 20817216 (-) False grem1b

Expression Profile