RNA id: TU199619



Basic Information


Item Value
RNA id TU199619
length 223
lncRNA type inter_gene
GC content 0.40
exon number 1
gene id G168630
representative True

Chromosome Information


Item Value
chromosome id NC_047604.1
NCBI id CM018550.1
chromosome length 29376037
location 19987648 ~ 19987870 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence


GTTgaagttcacatcaaatatcagaatggtgaaaaagtgatctcagtggtATCCAGTTTTTAATATCCAGTTTTTTGGCATCCATTTTTTAACATCTAGTTCTGCTGGCAGAAATGCCGTGATgttgagaaaggtcagaggagaatggacaggCTCAtatgagctgacaggaaggctatggtaacttaaatagtcactctttacaaccgtggtgagcagaaac

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU199571 lncRNA upstream 99494 19887927 ~ 19888154 (+) True G168585
TU199473 lncRNA upstream 212982 19772890 ~ 19774666 (+) True G168504
TU199406 lncRNA upstream 224303 19722780 ~ 19763345 (+) False LOC113538915
TU199117 lncRNA upstream 300057 19682976 ~ 19687591 (+) False G168191
TU199143 lncRNA upstream 390681 19596423 ~ 19596967 (+) True G168207
TU199621 lncRNA downstream 30891 20018761 ~ 20019038 (+) True G168632
TU199622 lncRNA downstream 31287 20019157 ~ 20020371 (+) True G168633
TU199623 lncRNA downstream 32764 20020634 ~ 20021068 (+) True G168634
TU199624 lncRNA downstream 34512 20022382 ~ 20022838 (+) True G168635
TU199625 lncRNA downstream 35080 20022950 ~ 20023528 (+) True G168636
XM_034307796.1 mRNA upstream 3407 19941911 ~ 19984241 (+) True LOC113538714
XM_034307797.1 mRNA upstream 3407 19941913 ~ 19984241 (+) False LOC113538714
XM_026934008.2 mRNA upstream 3407 19941913 ~ 19984241 (+) False LOC113538714
XM_026934010.2 mRNA upstream 3407 19941913 ~ 19984241 (+) False LOC113538714
XM_026934009.2 mRNA upstream 3407 19941914 ~ 19984241 (+) False LOC113538714
XM_026934419.2 mRNA downstream 614 19988484 ~ 20014894 (+) True xgb
XM_026934514.2 mRNA downstream 154844 20142714 ~ 20148008 (+) False zbtb42
XM_026934515.2 mRNA downstream 155731 20143601 ~ 20148008 (+) True zbtb42
XM_034308323.1 mRNA downstream 273738 20261608 ~ 20313158 (+) False dnajc17
XM_026918653.2 mRNA downstream 274491 20262361 ~ 20313158 (+) True dnajc17
XR_004578926.1 other upstream 65247 19913633 ~ 19922401 (+) True LOC113538658
XR_004578927.1 other upstream 72939 19913633 ~ 19914709 (+) False LOC113538658
XR_004578946.1 other upstream 101139 19879735 ~ 19886509 (+) True zfyve19
TU199111 other upstream 300057 19674913 ~ 19687591 (+) True G168191
TU199113 other upstream 300057 19679315 ~ 19687591 (+) False G168191
TU199644 other downstream 54607 20042477 ~ 20042935 (+) True G168650
XR_004578908.1 other downstream 533725 20521595 ~ 20531222 (+) False LOC113530103
XR_004578910.1 other downstream 533725 20521595 ~ 20531222 (+) False LOC113530103
XR_004578911.1 other downstream 533725 20521595 ~ 20531222 (+) False LOC113530103
XR_004578909.1 other downstream 533725 20521595 ~ 20531222 (+) False LOC113530103

Expression Profile