RNA id: TU199706


Basic Information

Item Value
RNA id TU199706
length 2008
RNA type TUCP
GC content 0.40
exon number 5
gene id srp14
representative True

Chromosome Information

Item Value
chromosome id NC_047604.1
NCBI id CM018550.1
chromosome length 29376037
location 20013579 ~ 20018717 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GGGGCTTGCAGCGGAAGTGTAGAAGCGACGTGTGCTTTCAGTGGAGCTGTTCGGCTTTGAGTGAGCTGCTCCATTTGTAAGGAACACCATGGTACTGTTAGAAAACGACGCGTTTCTCACTGAACTCACACGCCTCTTCCAGAAGTGCAGGACCAGCGGCAGTGTGCTGATCACCTTAAAGAAATacGATGGGAGGACGAAGCCGGTGCCGAGGAAAGGCCATCCGGAGACATTTGAACCAGCTGACAATAAATGTCTCATCAGAGCATCAGATGGCAAGAAGAAGATTAGCACAGTGGTCAGCACTAAAGAAGTAATAAAATTTCAGATGGCGTACTCCAATTTATTGAGAGCACACATGGATGGCTTGAAGAAGAAAGACAAGAAGAGTAAAAGTAAGAAGACTAAAGCTACACAGTGATTAAAAATaccaaggagagagagagagagagagagagaggagctgtTTATTTAGCAAGACCACCTTCAGTGACATCCAATACTCACCTGTGCCGACCTCAACAGCTTTTCCTTCGTGCTGGGGGTGGGTGGCACTCTAGCAACCGAAGGAGTGGAGGCCATTTTCTCTGCCCGAATATTATCTTGACATCTTCCCTGTTCAAAACTGGTCAAGATTTTGCTACAGTCATCGGGTATAATTTGGTGGTGCCATATGATGTTGCTGTCTTTTGATtacaaaccattttttttttcctcaattttTAAATGCGTCTTAAAAGATCACCTAGCCTCTGCTCCTCATGTTGGAAGTTCACCACAAATGTCCAGGATTTAAATCCTCCAGtgtacagatttgtttttgacTTCAGAGgagtatatacatttttattctgaaagATACTTCTATGTTTATTACTAGAGTCATCCATAATTAATTTGTCCCAATCAATGTTTGTGCctttgacacatttttttcctcccttccATGCATTTTTTGGTACAAACCCAAAATGGACTTCTAGGTTTACAGTTATTGTTTCACTTTGTTGGCCCAAACAATGCAATGAGCAAATATCACAATGTTTAGAAGAGCTGTTAACTTATTTTGAGTCCGAAATAAAAAATGTCCCAGGCTTTTTCTGTGTAATACTTGTCAGGTAATTTACCCTTCGTTAGGGCCTTTTTTGAGTTGTTTAACTTGTTTTGCTGTTAATGTCATGGACCAGAACAGACTTTCTTATTTGTGATTCAAAGAAACGTTATGCAATGTAAAAATCAGTAAATTACAACACTATGTACACAACTAACTAACATAAAACAAAGCTAAAGCTGAAGTTTTAAAGTGCTGTGTTCCTCTTGTCGGGCCGCTCTCTGCTTGAGCCGACTGTGTTGCTTCGTTTggcttcctcttcctcctccgtGTAACCCTGTCGCATCAGCTGAGTCACGTACTGGAACAGAGTCTGGAAATCAAATCCAAGAAAATATGACATCTAAACCTAGTGCATATTCTTCTGTTCAGTGgtaataaaaatcatttctatCTTTACAGGATGTTCAGAATCACTGAGACTGTAGATGTACATTCAGGTCCAGATATCTTTGGACACTGATGTTGTTactttagctgtctaccacagttcACCTGGCATGTAAAttccctcaaattaaagctgaaagtctgcactttgagctcatattctTTTAACTTCGACTCCTATAAACTGTAGTAGACAGCTAAAAGAacaactttgtcaatgtccaaatatggATCTGCCTGTACATCTACAGGCTCAGtcacacaaaatgcaaaactcTCTTGGTTTTTCCCTGAACCTTAATATTATGGGCTGTTTTGTGTAGAACCAAAATCAAGTTTTAGTTCCAGACTGTAATATTACAAAGGGGAGAAATATTTATACAAGGCACTGTAGAGCACAGGGTTTGTCACAAACAGCATACTGTTTTCATAAGTAGAAGGCTACTACAGTGTAGTAACAGTGTATTACTGCTGTTGACACATGATtttatgatgtgtgtttgatag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU199664 lncRNA downstream 73539 19939816 ~ 19940040 (-) True G168665
TU199660 lncRNA downstream 89392 19923105 ~ 19924187 (-) True G168661
TU199596 lncRNA downstream 125749 19887315 ~ 19887830 (-) True G168608
TU199462 lncRNA downstream 246626 19766754 ~ 19766953 (-) True G168493
TU199433 lncRNA downstream 247852 19763846 ~ 19765727 (-) True G168466
TU199749 lncRNA upstream 80433 20099127 ~ 20100572 (-) True G168747
TU199752 lncRNA upstream 87519 20106213 ~ 20106858 (-) True G168750
TU199758 lncRNA upstream 126573 20145267 ~ 20148736 (-) True G168756
TU199760 lncRNA upstream 130796 20149490 ~ 20149902 (-) True G168758
TU199761 lncRNA upstream 131599 20150293 ~ 20151303 (-) True G168759
XM_026934191.2 mRNA downstream 104832 19891594 ~ 19908747 (-) True zgc:162989
XM_034307953.1 mRNA downstream 105236 19901968 ~ 19908343 (-) False zgc:162989
XM_026934190.2 mRNA downstream 105330 19901968 ~ 19908249 (-) False zgc:162989
XM_026933817.2 mRNA downstream 134244 19873422 ~ 19879335 (-) True bub1bb
XM_026934335.2 mRNA downstream 146414 19840371 ~ 19867165 (-) False LOC113538902
XM_026933801.2 mRNA upstream 525 20019219 ~ 20025636 (-) True LOC113538610
XM_034308017.1 mRNA upstream 8599 20027293 ~ 20059002 (-) False cep170b
XM_034308018.1 mRNA upstream 8599 20027293 ~ 20059002 (-) False cep170b
XM_034308019.1 mRNA upstream 8599 20027293 ~ 20059001 (-) False cep170b
XM_026933905.2 mRNA upstream 8599 20027293 ~ 20059001 (-) False cep170b
TU199357 other downstream 418802 19590068 ~ 19594777 (-) False LOC113538862
TU198915 other downstream 1046966 18961708 ~ 18966613 (-) True G168015
TU198855 other downstream 1165883 18843803 ~ 18847696 (-) False LOC113538624
TU198375 other downstream 1631124 18378897 ~ 18382455 (-) False gdf7
TU198371 other downstream 1697372 18305743 ~ 18316207 (-) True G167566
TU199915 other upstream 304070 20322764 ~ 20330744 (-) True gchfr
TU200198 other upstream 546235 20564929 ~ 20565799 (-) True G169119
XR_003403127.1 other upstream 714236 20732930 ~ 20733052 (-) True LOC113530231
TU200304 other upstream 795867 20814561 ~ 20817216 (-) False grem1b
TU201211 other upstream 2096871 22115565 ~ 22115876 (-) True G170023

Expression Profile