RNA id: TU199758


Basic Information

Item Value
RNA id TU199758
length 3470
lncRNA type inter_gene
GC content 0.38
exon number 1
gene id G168756
representative True

Chromosome Information

Item Value
chromosome id NC_047604.1
NCBI id CM018550.1
chromosome length 29376037
location 20145267 ~ 20148736 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

acgGGTACACGTCAAAAGCGGCaaataaaaagcacaaacaaatTCCAAGTCGGAACATAACAGCGTTaatctgtccaaaaaaaaaaaaaaaattaaatcaaacagaTTGTCACCTACATTCACtacagcactaacaccaaagcATCTGTTTcctataaaatatatgtttcttatcaaaaaaattatattaaatctaATGGCACTTCTACAAAGTCTATTAAAAATGTTCTCCGTTTAGTAGCATCTTTCATTACTTAAGTCAAACTCAGTAAAATATTTGCACAAGaaagaaatcaataaataacTCTTATGATTATACAGTTTCACAGTCTGAACCTTAGAAGACAGATATTCCAGTAttaatgtttacacacacacttttgctgAAGAAAAGCATATTCATGCCTAAAGTAATGGCTCGATTTCTCAAATCAAAGCACATCTTAAAGAATTATTACTGATGCTTGCATTATCCATGATTATGCTCCTGCTGGTCATATGTGATAGTTAAATATTGGCTCACTGCTGATCACATGACTGCATCCGAACAGGAAGTTACTTCAAGTATGATGCACCTGTTTCCTCTATGTACTATACACAGCCTAATATCATAATATCGTATTCTgttcttttaacattttgtgaTCTTTTCTATCTTAAAAAACACTCTTATTGTACTGTCAATTTTAACatgaaaagcaaacaaaatgtTATCACCTtatgttgcctttttttttttttttgccattagtAACAGCTTGTGGAGAATGAATAATTACAGGCCCACAATAATGCCCAATAATGAATTTGCTGTTGGATTAATGTGTGTCAACAAGGCACATACTGTGTAGATCAAGTCGATGCATATTACTTCAACATATGAACGTCAGTGGAGTCAGATttttatcaacacacacatacacacatacatttcaaataaagcACCCACAATTCATCAGTATTAGCTGCGTCAAATAGACCATCTGAAAAAGACTTACTTTCCAGTTCTACTTAGTAATATAATTACACCATTCTCTGAAAAAGTTCATGTAAGTTCCACTAATTTCCAGTGTTCCACACAGAAGCTTAACTGAAGACCCTTAAACATACACAGAGCTTGTAAAAACATACGCTTTTTAAACAGCTGCCCAACAAATGTGCAACAATGACGAAATGGTTTCAAAGTGTAGTCCAGTCAGTGAGAATCACACGTTTATGCTctaatgtttctttctttctttctttcttttttttttgcaggaaacattacattaaacagTTCTGGTGACAGAAACTTGTGTTTGTAACACTTGAAACAGTGTTTGTAACACTTCCAGTAGTTTAGAGCAAAATGTGATGTGTTACTCCCTAAATAAATACCTGggataatgctttttttttttttaattgtaggaCTATTAATCCAGCTATTGCAAGTCTTGGTGACATTGTGCTTATGAATCTGCTACATCTGTCACAGCCTTACAGCATTACAGGctttaaaacagaccaacaAAACAAGGGAAGACTTCAACTTCGAAAGTCAAAAGATTTGAGAGATTCCAGATGTTGTCaagaaaacaaagataaataaaatgcatatttacaataaatatacagttaGAAATAGCAGCCTACAGAATATCAGTGTTGTATGTACAGTCTATGTATGCACAAAGCAAGTGCGTCTTAGCATTTCTGGAGTCAACTCTTGATAAACAGTGATTAAAATGGCTTATCTACACAAGTTACAGTGAAATGATAAACCGATATACAGCAACTGATTTTACAATCAATCCATTCAGTGTAGCCGAAACAGTACCCATAGGACATATTAGGACCTAACACAACTGTCTATACTTCAGATGTTTACAGTAAACCCTGAAACCACAGAACTAATAAATAATTCTAATCAAGTTTTCTCAGGAAAAATGAAACAGTATTATGTGGACTTTTAGTGCCTCTTGCCTTTATAACTAAAAAACTAAACTTAACCTGTGAGCgttaaaactaaaaaacaaaagttaaCCTGTGAGCGTTATCCAAAACAACTAACTCAAAAATGTTAGGAAGGAACGAAAGGATAAAGTTAAGTAAAAAGATAGAAAGGCTTCAATATTCATGTTCCACCAGAATTTTTTACCAAATTGTTAGTGTTTCCAGTCAAATAGGATTAATAAAGACCCACCAAAATGAACTCAATGctagcaaaataataaaaagggtTATCTGAGTTCCATCCAGAGGTCCCATTTCACCTCATTCAGcttctcaaaaacaaaaacaaacaaaaaaccctcgTTTCATTTTATGTACTGCAGAAAAACTGCAATAGTTATAATAAAGGTAGTAGTTGTTCTTGCAAATTGCCTGTGCGTTAATTGTATTACTTCAGAAACGGTTTCCAATTCAAGAGGAGACACATGACCCTGTTTCCCCAGAAGTGATAAAGAAGCGACAGCCAAATAATTACCAACTTCTCCACCTTTCCGGATTCAGCAAGTAGGACTTTAACCCGAATAGAGATCAAAAATCTGTAAATTATGAAGCTATGATTAAATCAATTTGCAGATATGACTTAACGTATGTTTCAACTGCTCACTTCAATACAATGATTCATCCATTCAGGAATATGCAGTTACTTCACAACTTATACTATTGTTGACAGGACATGACAAAAAAActcatatttatcatttaactTCAGAAGATGCTGCCAGTGACTGACCAAGTGCATCAAAAACCTTCATTTCACACTTCTCCACTGGGTGGAGGGACTCCAATAGGACCTTTAGTCTTTTAGACCTTTAAACTCTGcattaaaatacagcaaaatactGGATCCAATTTTAAGTTGTAACATATCTACAGCCGGTCGAGTGCATAGTCACCAAAAACCAGTGTGGCTTAGGGTTTAGAGAAGGACACCCCTCTATGTTTAAATACTTCATCTATGTAGGTCAGAAACAGCCTTTGGGAGTAGAAAAGGAGTGTGCTTATCCAATAGAGAGGGTCTTGACGAGGGCGCAGTGGAACTTGCGGATATGGCGGTACAGGTCTCCTGACTGCGTGAAGCGGCGCTCACACCACTTGCAGGCGTGAGGTTTCTCGCGTGTGTGCACCACTGCGTGCCTGCTCAGGTTGTGCGAGTACTGGAAGCTCTTACCGCACGTGGCACACGTGTAGGGCTTCTCGCCCGAGTGTGTGCGCTCGTGCCGCTTTAATGTGTACGCACATGAGAAGGTCTTGCCACACTGAGCACAGGTGGGCACCGAAGCGTCGGGTGAGAGCTTGGTGCGTGCGCCCTCCCGCTCGCGGAAGTGCGAGCTCAGGTGCGGCTGCAGAGCATGTGGTGTTGGGAATGCCTTGCTGCATAGTGGGCACACACAGACTGGAACAGTGCCTGGAGGTGGCAGGAGTGCAGCAATGTCCGTGGAGGCCAGCTCTTCGTCGTCATCTTCCTCCTCACT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU199752 lncRNA downstream 38409 20106213 ~ 20106858 (-) True G168750
TU199749 lncRNA downstream 44695 20099127 ~ 20100572 (-) True G168747
TU199664 lncRNA downstream 205227 19939816 ~ 19940040 (-) True G168665
TU199660 lncRNA downstream 221080 19923105 ~ 19924187 (-) True G168661
TU199596 lncRNA downstream 257437 19887315 ~ 19887830 (-) True G168608
TU199760 lncRNA upstream 754 20149490 ~ 20149902 (-) True G168758
TU199761 lncRNA upstream 1557 20150293 ~ 20151303 (-) True G168759
TU199899 lncRNA upstream 149805 20298541 ~ 20301554 (-) False LOC113529462
TU199937 lncRNA upstream 294261 20442997 ~ 20443772 (-) True G168908
TU200177 lncRNA upstream 390126 20538862 ~ 20540283 (-) True G169104
XM_026934181.2 mRNA downstream 18928 20065720 ~ 20126339 (-) True akt1
XM_034308017.1 mRNA downstream 86265 20027293 ~ 20059002 (-) False cep170b
XM_034308018.1 mRNA downstream 86265 20027293 ~ 20059002 (-) False cep170b
XM_034308019.1 mRNA downstream 86266 20027293 ~ 20059001 (-) False cep170b
XM_026933905.2 mRNA downstream 86266 20027293 ~ 20059001 (-) False cep170b
XM_026933739.2 mRNA upstream 20394 20169130 ~ 20174078 (-) True siva1
XM_026920002.2 mRNA upstream 53383 20202119 ~ 20212962 (-) True adss1
XM_034308000.1 mRNA upstream 71138 20219874 ~ 20255868 (-) False inf2
XM_026919032.2 mRNA upstream 71138 20219874 ~ 20255868 (-) False inf2
XM_026919030.2 mRNA upstream 71138 20219874 ~ 20255868 (-) False inf2
TU199706 other downstream 126573 20013579 ~ 20018694 (-) True srp14
TU199357 other downstream 550490 19590068 ~ 19594777 (-) False LOC113538862
TU198915 other downstream 1178654 18961708 ~ 18966613 (-) True G168015
TU198855 other downstream 1297571 18843803 ~ 18847696 (-) False LOC113538624
TU198375 other downstream 1762812 18378897 ~ 18382455 (-) False gdf7
TU199915 other upstream 174028 20322764 ~ 20330744 (-) True gchfr
TU200198 other upstream 416193 20564929 ~ 20565799 (-) True G169119
XR_003403127.1 other upstream 584194 20732930 ~ 20733052 (-) True LOC113530231
TU200304 other upstream 665825 20814561 ~ 20817216 (-) False grem1b
TU201211 other upstream 1966829 22115565 ~ 22115876 (-) True G170023

Expression Profile