RNA id: TU199760


Basic Information

Item Value
RNA id TU199760
length 413
lncRNA type inter_gene
GC content 0.40
exon number 1
gene id G168758
representative True

Chromosome Information

Item Value
chromosome id NC_047604.1
NCBI id CM018550.1
chromosome length 29376037
location 20149490 ~ 20149902 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GGCCTTTCCAGCCTCCCTTTTGGAGGTCATCACACTTACATAATTTACAATTTTGCCATTTATATTGCATATAAAGTAAGTATAAAGTGTTAAATGAGCAATAGTGACCCTGTCCCCCATATACACACTTCCCCATCCACCTGTGACAACATCTAAAAAGTACAAGGAGAATACATATAGGAGAAAGAAACGaggaaagaacaacaacaaacaacaatatAGTCCCCTTCCCAACCCAACTGCAGCTATacatcaaacacacagacaagtcagcagacagacagacaaacagagactgacagacaagacagctgacagacagacagacagacagagacaagaCAGTTGACAGACAAACAAATGTGAGCTGATTAGCCTTGTGTCATACACAAAGTCCTTTTGAGACATTTTTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU199758 lncRNA downstream 754 20145267 ~ 20148736 (-) True G168756
TU199752 lncRNA downstream 42632 20106213 ~ 20106858 (-) True G168750
TU199749 lncRNA downstream 48918 20099127 ~ 20100572 (-) True G168747
TU199664 lncRNA downstream 209450 19939816 ~ 19940040 (-) True G168665
TU199660 lncRNA downstream 225303 19923105 ~ 19924187 (-) True G168661
TU199761 lncRNA upstream 391 20150293 ~ 20151303 (-) True G168759
TU199899 lncRNA upstream 148639 20298541 ~ 20301554 (-) False LOC113529462
TU199937 lncRNA upstream 293095 20442997 ~ 20443772 (-) True G168908
TU200177 lncRNA upstream 388960 20538862 ~ 20540283 (-) True G169104
TU200182 lncRNA upstream 397743 20547645 ~ 20547877 (-) True G169109
XM_026934181.2 mRNA downstream 23151 20065720 ~ 20126339 (-) True akt1
XM_026933907.2 mRNA downstream 90490 20027293 ~ 20059000 (-) False cep170b
XM_026933739.2 mRNA upstream 19228 20169130 ~ 20174078 (-) True siva1
XM_026920002.2 mRNA upstream 52217 20202119 ~ 20212962 (-) True adss1
XM_034308000.1 mRNA upstream 69972 20219874 ~ 20255868 (-) False inf2
XM_026919032.2 mRNA upstream 69972 20219874 ~ 20255868 (-) False inf2
XM_026919030.2 mRNA upstream 69972 20219874 ~ 20255868 (-) False inf2
TU199706 other downstream 130796 20013579 ~ 20018694 (-) True srp14
TU199357 other downstream 554713 19590068 ~ 19594777 (-) False LOC113538862
TU198915 other downstream 1182877 18961708 ~ 18966613 (-) True G168015
TU198855 other downstream 1301794 18843803 ~ 18847696 (-) False LOC113538624
TU198375 other downstream 1767035 18378897 ~ 18382455 (-) False gdf7
TU199915 other upstream 172862 20322764 ~ 20330744 (-) True gchfr
TU200198 other upstream 415027 20564929 ~ 20565799 (-) True G169119
XR_003403127.1 other upstream 583028 20732930 ~ 20733052 (-) True LOC113530231
TU200304 other upstream 664659 20814561 ~ 20817216 (-) False grem1b
TU201211 other upstream 1965663 22115565 ~ 22115876 (-) True G170023

Expression Profile