RNA id: TU199791


Basic Information

Item Value
RNA id TU199791
length 1411
lncRNA type inter_gene
GC content 0.38
exon number 3
gene id G168783
representative True

Chromosome Information

Item Value
chromosome id NC_047604.1
NCBI id CM018550.1
chromosome length 29376037
location 20207984 ~ 20209593 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CAGCATTTGCCCCCTCCACAAGAATTTTCTTCATGGGTCCGTGAATAGCGTCATACATAAAATACACTCCGTCCCTCACCATGGGTCTTATTCTCTCTGCATAATCCTGCAAATTTTTTTTAGTTCACCTTCAACATCCAATTTAAGAGCCGGATACATGGACTGGTACTGCTGTGCCAGGTTCTTGAAtctaaaatgcaaaaacagtATGAGTTTAGATTCTAAGCACAACCTTGTGAATTCTGGTTAAAGAAATTTTAGAACTGTACTTGGTGGAAAACTCTTTAAAATCTGCTAGCAGGTCACAGATGCGAAGTCCAGTTCGGGATGCCTTGCATGCGTACGTTGGTCCAATGCCTTTCTTGGTCGTTCCTATGTCTTGCCTTCCTGTGCTTGTCTCTGCACTTCTTGCATTCCATCCACAGCCTGATGGAAATCGAAAACTAAGACAGAACAGAGTTCGGAATCagcatcattttaaaatcatgacACTCTGTATCATATACACATACGTTTAATACTGTTTTAACACACCCTTGTTGACTACCCTCATGACTTGGAAGTATGAAACACATATATTATGTCGATTTGCTGACTTGCTAGCTGACAAGCTAATATAGTAATTAGCTAGCTCGCTGACTAGCTAGCAGAAGTAGTGTAATTATGAAGTTATGTTAACTGTCATGTGTAGATGTGTCATGTGTTGGTAAAATAAAACTCAATCTGAATATAGGAAGTATTGTATTAGATTTTTATTGATCCTGTTTAACACTAATAAacagtttttgtcatttttacctTAGTCTCTTGTTCCTTCAAGGGGTCATCTAACATACTTCACTTGAGCTAATTAATTTCCAAAGGCTGTTAAGGTATCAGTGGGGATTATCACAAGTTAGAGGAAGTTGAATAAAAAGTGTCAAAAAGGAACATAGTATAGGAACATAGCCAACATACAAATATTATACCTATGTGAGCTCTATCAGAGATGACGAGTCTTTTCTCCCAGCCTTTCAAGCCTAGCCATggaagaagataaaaaaaaatcaatagaatCCTAGGTTGAAGCTGAAACAACACTACAACTGACAATGGTTTATATATTtaccaaatgaacaaaaatatgcaatgaaaagtgaattgaatcaaattgGCACCAtctggctctgctttcctgcaGAACATAGCCACAGGTCAAGTCAAACACACATGTTCCTCAGACATGTCTCAGAACAGGATTTAGAGATATCAGATGTCTGTGCTTTTTGTGCCTCAAAACAACACTTGCCTGGTACCCATCTGATTTAGGATTATTCATCACATCACAAGGTAAACTAACTCTACTTTACCTTTCTTCTCATTTTTGTCAATCTCTTCAAAAAGGCCCGGAAGATGAATGACTACGCCGTTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU199788 lncRNA upstream 2980 20201607 ~ 20205004 (+) True G168780
XR_004578994.1 lncRNA upstream 9060 20197157 ~ 20198924 (+) True LOC117598324
TU199715 lncRNA upstream 59356 20145218 ~ 20148628 (+) False zbtb42
TU199744 lncRNA upstream 65978 20141788 ~ 20142006 (+) True G168742
XR_003403879.2 lncRNA upstream 105607 20100843 ~ 20102377 (+) True LOC113538793
XR_004578952.1 lncRNA downstream 27508 20237101 ~ 20238639 (+) True LOC117598257
XR_004579010.1 lncRNA downstream 137947 20347540 ~ 20348832 (+) True LOC117598343
TU199869 lncRNA downstream 232782 20442375 ~ 20442632 (+) True G168850
TU199855 lncRNA downstream 234197 20443790 ~ 20443933 (+) False fsip1
TU199853 lncRNA downstream 234651 20444244 ~ 20453805 (+) False fsip1
XM_026934514.2 mRNA upstream 59976 20142714 ~ 20148008 (+) False zbtb42
XM_026934515.2 mRNA upstream 59976 20143601 ~ 20148008 (+) True zbtb42
XM_026934419.2 mRNA upstream 193090 19988484 ~ 20014894 (+) True xgb
XM_026934009.2 mRNA upstream 223743 19941914 ~ 19984241 (+) False LOC113538714
XM_034308323.1 mRNA downstream 52015 20261608 ~ 20313158 (+) False dnajc17
XM_026918653.2 mRNA downstream 52768 20262361 ~ 20313158 (+) True dnajc17
XM_034307749.1 mRNA downstream 155581 20365174 ~ 20444472 (+) True fsip1
XM_034307747.1 mRNA downstream 190409 20400002 ~ 20444472 (+) False fsip1
XM_034307750.1 mRNA downstream 190409 20400002 ~ 20444472 (+) False fsip1
TU199644 other upstream 165049 20042477 ~ 20042935 (+) True G168650
XR_004578926.1 other upstream 285583 19913633 ~ 19922401 (+) True LOC113538658
XR_004578927.1 other upstream 293275 19913633 ~ 19914709 (+) False LOC113538658
XR_004578946.1 other upstream 321475 19879735 ~ 19886509 (+) True zfyve19
TU199113 other upstream 520393 19679315 ~ 19687591 (+) False G168191
XR_004578908.1 other downstream 312002 20521595 ~ 20531222 (+) False LOC113530103
XR_004578910.1 other downstream 312002 20521595 ~ 20531222 (+) False LOC113530103
XR_004578911.1 other downstream 312002 20521595 ~ 20531222 (+) False LOC113530103
XR_004578909.1 other downstream 312002 20521595 ~ 20531222 (+) False LOC113530103
XR_004578906.1 other downstream 312002 20521595 ~ 20527951 (+) False LOC113530103

Expression Profile