RNA id: TU199855


Basic Information

Item Value
RNA id TU199855
length 144
lncRNA type sense_over
GC content 0.42
exon number 1
gene id fsip1
representative False

Chromosome Information

Item Value
chromosome id NC_047604.1
NCBI id CM018550.1
chromosome length 29376037
location 20365174 ~ 20453805 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ctgggattttcacatacgacagtctctagagtttacacataatggtgcaaaaaacaaaaaacatccagtgagcagcagctctgtggacaGAAACACTTTATTGATGACAGAGGTCAGATGAGAATGGCCAGTCACCCAGTTTAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU199869 lncRNA upstream 1158 20442375 ~ 20442632 (+) True G168850
XR_004579010.1 lncRNA upstream 94958 20347540 ~ 20348832 (+) True LOC117598343
XR_004578952.1 lncRNA upstream 205151 20237101 ~ 20238639 (+) True LOC117598257
TU199791 lncRNA upstream 234197 20207984 ~ 20209593 (+) True G168783
TU199788 lncRNA upstream 238786 20201607 ~ 20205004 (+) True G168780
TU199853 lncRNA downstream 311 20444244 ~ 20453805 (+) False fsip1
TU199991 lncRNA downstream 125943 20569876 ~ 20572563 (+) True G168938
TU199993 lncRNA downstream 129099 20573032 ~ 20573278 (+) True G168940
TU200100 lncRNA downstream 297411 20741344 ~ 20823383 (+) True G169045
TU200101 lncRNA downstream 388913 20832846 ~ 20842174 (+) False G169046
XM_034308323.1 mRNA upstream 130632 20261608 ~ 20313158 (+) False dnajc17
XM_026918653.2 mRNA upstream 130632 20262361 ~ 20313158 (+) True dnajc17
XM_026934514.2 mRNA upstream 295782 20142714 ~ 20148008 (+) False zbtb42
XM_026934515.2 mRNA upstream 295782 20143601 ~ 20148008 (+) True zbtb42
XM_026934419.2 mRNA upstream 428896 19988484 ~ 20014894 (+) True xgb
XM_034307746.1 mRNA downstream 77662 20521595 ~ 20526854 (+) True LOC113530103
XM_026919862.2 mRNA downstream 91123 20535056 ~ 20540298 (+) True LOC113530108
XM_026919861.2 mRNA downstream 96965 20540898 ~ 20544512 (+) True zgc:194887
XM_034308304.1 mRNA downstream 294986 20738919 ~ 20813729 (+) True LOC113529967
XM_026918989.2 mRNA downstream 399865 20843798 ~ 20896411 (+) False eif2ak4
TU199644 other upstream 400855 20042477 ~ 20042935 (+) True G168650
XR_004578926.1 other upstream 521389 19913633 ~ 19922401 (+) True LOC113538658
XR_004578927.1 other upstream 529081 19913633 ~ 19914709 (+) False LOC113538658
XR_004578946.1 other upstream 557281 19879735 ~ 19886509 (+) True zfyve19
TU199113 other upstream 756199 19679315 ~ 19687591 (+) False G168191
XR_004578908.1 other downstream 77662 20521595 ~ 20531222 (+) False LOC113530103
XR_004578910.1 other downstream 77662 20521595 ~ 20531222 (+) False LOC113530103
XR_004578911.1 other downstream 77662 20521595 ~ 20531222 (+) False LOC113530103
XR_004578909.1 other downstream 77662 20521595 ~ 20531222 (+) False LOC113530103
XR_004578906.1 other downstream 77662 20521595 ~ 20527951 (+) False LOC113530103

Expression Profile