RNA id: TU199899


Basic Information

Item Value
RNA id TU199899
length 994
lncRNA type sense_over
GC content 0.32
exon number 3
gene id LOC113529462
representative False

Chromosome Information

Item Value
chromosome id NC_047604.1
NCBI id CM018550.1
chromosome length 29376037
location 20298511 ~ 20301554 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AACCGTCAGACCTGACATTGGACCTTAGCACTCACAAGCTAGAAAGGACTATGAACTGTGGAGAGTCTCTGCTGGCCTGAATTTCCAGCCAGAAATATAAACCTGCTTTAATGAAAAGATTTAGATCAAGaataAAGTGTTCCATGATGTGCCATTCATAAAGAACCCTTACATCCATTTACATCGACtttcaaaaaggaacccatATATTTTACGTTTGACCAAATTCAGTGGGATGCCCCTAAGGACAACATTACAAGACCTGGGGCCCTCTATATTGGATGACGTACTGCAGGTTATGGACAAACTCCAACAGTAAAGGAAAAACTGTGCCATGTGATGCCTTCTATATTAATGGAAAACCAATGTATGGACTTCCTGACTTCACTGGAAGAATACGAGATACTGAGTGGTGAGGACATCTCTAATTTGgacaataataaacaaagcttgtggttgactttgactttgtgGTTTAAATAGAATTTGACCAGTGTCAGGATAATCAAGATTATTAacatatgttaaatatattaaacagaGGACCGATAACataatatttaagatttaatattaatatttcagttcCTCTTGCACTGAAAATTATAAATTGTATTGTGTGTTGTGAAAATACACTGATATTTAATGGTTTTAAAACTTTCAAACTTTCAGGAGGCTGACACAATATTTCAAATACACATGTTCTAGAATACTGCGACTCATAAAGCAACTTATcacttatatattttaattattattatatataattattatattacaattcaattataacaaaaaaattacattcaaaCTATAATTTTAAGAATGCTgaatgtattgtttttattaattaggatgtttattgatgtgttatgaaaaaaattcttttgttaaatcttttgttatttaatgtttcagtattttagaGGAGTAGTCCCAGTAATCCCACCAAAGTCAATAGCACAGACTGCACATAAAATCTCTTGTCAATGGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU199761 lncRNA downstream 147238 20150293 ~ 20151303 (-) True G168759
TU199760 lncRNA downstream 148639 20149490 ~ 20149902 (-) True G168758
TU199758 lncRNA downstream 149805 20145267 ~ 20148736 (-) True G168756
TU199752 lncRNA downstream 191683 20106213 ~ 20106858 (-) True G168750
TU199749 lncRNA downstream 197969 20099127 ~ 20100572 (-) True G168747
TU199937 lncRNA upstream 141443 20442997 ~ 20443772 (-) True G168908
TU200177 lncRNA upstream 237308 20538862 ~ 20540283 (-) True G169104
TU200182 lncRNA upstream 246091 20547645 ~ 20547877 (-) True G169109
TU200196 lncRNA upstream 262601 20564155 ~ 20564706 (-) True G169118
TU200194 lncRNA upstream 262902 20564456 ~ 20564828 (-) False G169118
XM_026919034.2 mRNA downstream 42666 20233453 ~ 20255875 (-) False inf2
XM_026919033.2 mRNA downstream 42671 20222775 ~ 20255870 (-) False inf2
XM_034308000.1 mRNA downstream 42673 20219874 ~ 20255868 (-) False inf2
XM_026919032.2 mRNA downstream 42673 20219874 ~ 20255868 (-) False inf2
XM_026919030.2 mRNA downstream 42673 20219874 ~ 20255868 (-) False inf2
XM_034308391.1 mRNA upstream 21960 20323514 ~ 20330746 (-) False gchfr
XM_026920020.2 mRNA upstream 21960 20323514 ~ 20330746 (-) False gchfr
XM_034307745.1 mRNA upstream 67580 20369134 ~ 20372103 (-) True LOC113530110
XM_026919852.2 mRNA upstream 142641 20444195 ~ 20453800 (-) False LOC113530102
XM_026919850.2 mRNA upstream 142641 20444195 ~ 20453800 (-) True LOC113530102
TU199706 other downstream 279847 20013579 ~ 20018694 (-) True srp14
TU199357 other downstream 703764 19590068 ~ 19594777 (-) False LOC113538862
TU198915 other downstream 1331928 18961708 ~ 18966613 (-) True G168015
TU198855 other downstream 1450845 18843803 ~ 18847696 (-) False LOC113538624
TU198375 other downstream 1916086 18378897 ~ 18382455 (-) False gdf7
TU199915 other upstream 21210 20322764 ~ 20330744 (-) True gchfr
TU200198 other upstream 263375 20564929 ~ 20565799 (-) True G169119
XR_003403127.1 other upstream 431376 20732930 ~ 20733052 (-) True LOC113530231
TU200304 other upstream 513007 20814561 ~ 20817216 (-) False grem1b
TU201211 other upstream 1814011 22115565 ~ 22115876 (-) True G170023

Expression Profile