RNA id: XM_026919607.2


Basic Information

Item Value
RNA id XM_026919607.2
length 1921
RNA type mRNA
GC content 0.48
exon number 2
gene id grem1b
representative True

Chromosome Information

Item Value
chromosome id NC_047604.1
NCBI id CM018550.1
chromosome length 29376037
location 20813689 ~ 20817439 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CCTCACCTCTCCAACCCCAGACACACTCCTCTCCTCCCATCCTCTGCCTAAACTCGCCCATTTCTCTCAAGTGGCTTCGGGGAAGTGATGAGGGGGTGAGTGTTAGATGGGGGCGGAAAGTTTGGGTTCTGCTCGCGTCGTGTCTGGCCAATAATGTGCAGAGAGCAGCCgtgaacatcatttaaaaaggAGACAGTCGGGCGCTGCTGCGATTCCTATTAAACCCCCATCagtgcgtgtgcgcgcgcgagtgcgtgtgtgtgcgtgcgtgcgtgcgtccGTGCGTGAGCGTGTGTCTGCGCGtgagcgtgtgtatgtgtgtgtgtgtgtctatggcatCGGTATGAGCTCTGTACACTCTCTCCAGCACACTTGATCATCTCTGATCCACACATTCGGCACTGGATTTTCTCCGGAAAGAAGGATTGATCACAAAGGTCTGATTGCCTTTTTCTTCAGACATCTCGACATAACTGCACTCATTAAAGCTCTGAGCTCTGACAGGATGATGAGATTGGTGCAGCTCACGTGCGCAGTGCTCTTGCTGTCGGTTCTTGTGTCCTGCACGGCGGAAACCAGAGCCACTCAGGGCGCAATTCCTAATCCGGGCAAAAGCAAACCAAACGAGTCGGAGCGACGACAGGGCGGCACTTCCTCATTGGCATCTTCCTCATCCTCGGGCAGAGGTAGAGGCTCGTCTTCCTCTGCAGAAGAGGTGCTGGAGTCGAGTCAGGAGGCGCTGCTTGTGACCGAGCGCCGCTACCTGAAGCGCGACTGGTGCAAGACGCAGCCGCTGAAGCAGACACTGCACGAGGAAGGCTGCGTGAGCATCACCATCCTCAATCGCTTCTGCTACGGCCAGTGCAACTCCTTCTACATCCCGCGCCATGTGCGCAGAGAGGAAGGAGCTTTCCAGTCGTGTTCGTTCTGCAAGCCCAGGCGCTTCACCACCATGACCTACACGCTGTCCTGCCCCGACCTTCAGCCGCCCACCCGCAAGAAGCGCGTGCAGCGTGTCAAGCAGTGCCGCTGCATCTCCATCGACCTGGACTGACGCGGGACATCCACAAATGCTGCTTTTGGGGAAACGTCCTTGAGTCGTTAAGTTCTGAGGACTTCTTTGGATGAAAAGTACaaattaaaagcacattttcaaGAAAAACAAGGAGAAGCACTGATATTGCGCAATCAGACGAACTCCAGCCAAGCGCACCGTCATGGACACAACTCCCATTTCATCACGCATTCACATTTTCCTGATTGACACTCCAAATCCCCGCCTCATGCAAGCATTAAACATATACAGGTATCCTCACTTTTTCCTCACTTTTGCCATCTGATTTTAAAAGGAGCAAACGTGCACAATACAAGGCGAGACGAATCCACTGGCAGAACCCACAGCACCACTCTGCATCATTCTGGAAACATTCTGGGACTTTACAGCCTAATCATGTAATTATAgctattaatatgtaataatgtaacagcctggttttattttctttgggttttttttttggagagtgCTGGAAGGTGTTTTTTCCACCATGTGGAAATTAGTGGTGATCTAATAAGACGTGTAAAgaagacttttatttaatatgataGAAGGACGCTTGTATAATAGCAGGTGTATTATATTGTCCATTTGTTGTGaattttgttttgtggacatttttATGTACCAGTTATTATAATAAGACCTGTGTGAGAATGACATCATCTTAAACACTTAgcacatgatttatttaaaataaaaaaaaaaaaaagtcttgcaAAAAGGGTACGGAACTTGTTTATAATGTACTTACTGCGGTCCATTCTGTTTACAAGTCTTTCTACACGACTGTTTAATGGGATTGCTGCTTTATCTTGACTGTAGGCCTGTtgagttaatgtattaataaaaagtgaaataaat

Function

GO: NA

KEGG:

id description
K23318 GREM; gremlin

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU200211 lncRNA downstream 240076 20573407 ~ 20573613 (-) True G169126
TU200194 lncRNA downstream 248861 20564456 ~ 20564828 (-) False G169118
TU200196 lncRNA downstream 248983 20564155 ~ 20564706 (-) True G169118
TU200182 lncRNA downstream 265812 20547645 ~ 20547877 (-) True G169109
TU200177 lncRNA downstream 273406 20538862 ~ 20540283 (-) True G169104
TU200372 lncRNA upstream 270987 21088426 ~ 21119625 (-) False bmf1
TU200371 lncRNA upstream 285784 21103223 ~ 21106375 (-) False bmf1
TU200477 lncRNA upstream 413504 21230943 ~ 21241630 (-) True LOC113529548
TU200479 lncRNA upstream 421495 21238934 ~ 21241630 (-) False LOC113529548
XR_003403066.2 lncRNA upstream 421611 21239050 ~ 21241637 (-) False LOC113529548
XM_026919849.2 mRNA downstream 84862 20569883 ~ 20728827 (-) False LOC113530100
XM_026919848.2 mRNA downstream 84862 20569883 ~ 20728827 (-) False LOC113530100
XM_026919844.2 mRNA downstream 84862 20569883 ~ 20728827 (-) False LOC113530100
XM_026919835.2 mRNA downstream 84862 20569883 ~ 20728827 (-) False LOC113530100
XM_026919834.2 mRNA downstream 84862 20569883 ~ 20728827 (-) False LOC113530100
XM_026919913.2 mRNA upstream 4362 20821801 ~ 20835679 (-) False arhgap11a
XM_026919912.2 mRNA upstream 4362 20821801 ~ 20835679 (-) True arhgap11a
XM_026918822.2 mRNA upstream 20618 20838057 ~ 20842152 (-) True actc1b
XM_034307770.1 mRNA upstream 79195 20896634 ~ 20956265 (-) True LOC113530222
XM_034308031.1 mRNA upstream 209068 21026507 ~ 21040538 (-) True LOC113529663
XR_003403127.1 other downstream 80637 20732930 ~ 20733052 (-) True LOC113530231
TU200198 other downstream 247890 20564929 ~ 20565799 (-) True G169119
TU199915 other downstream 482945 20322764 ~ 20330744 (-) True gchfr
TU199706 other downstream 794995 20013579 ~ 20018694 (-) True srp14
TU199357 other downstream 1218912 19590068 ~ 19594777 (-) False LOC113538862
TU201211 other upstream 1298126 22115565 ~ 22115876 (-) True G170023
TU201673 other upstream 2038055 22855494 ~ 22863767 (-) True G170435
TU202681 other upstream 3983644 24801083 ~ 24807095 (-) False G171256
TU203072 other upstream 4441400 25258839 ~ 25259209 (-) False G171569
TU203074 other upstream 4441400 25258839 ~ 25259362 (-) True G171569

Expression Profile