RNA id: TU200384


Basic Information

Item Value
RNA id TU200384
length 1922
lncRNA type inter_gene
GC content 0.51
exon number 1
gene id G169287
representative True

Chromosome Information

Item Value
chromosome id NC_047604.1
NCBI id CM018550.1
chromosome length 29376037
location 21181857 ~ 21183778 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TATTTACAGTGCAGTAATTAGTGTAGCAGTCCTAGATGGTCTATTTCATCAACCCGCAAAAACAGCACAGAACCAGTTTCCACATCTTGTCCTAACTTGAAGCGTTCCAaactttttacacactttttaaataagGGACCGTGTTGATGCCATCAGtcacaggcagagagaggaTATGTCCTTCACGCGTTAAGACTGGTGCAGTCTGAAATCAGGTGGTCTGAGGAAATCAGGCAGGGACTCGAGCTGTTCGTCAGGGACGGATCGCGTCACTTTGCGCATGCATTGCACGAACAGCGATGGTGGACATTGACCAGAGAGCCACTGGAGCGCCTGCTCCCCGATGAGGCGGCTCCACAGTGCGGGCTTCTCCCGCAGCTCCGTGCGCATGCGGAAGCGTAGCGCGGGCATGAACAGCACCAGATATCCGAGGCACACGCGCTTCGTACGCATGTCCATGTCACTTTGGCTGATTTGTTGCAGCAGGCAGTCCAGAGGTGTGTCTCCTGCACGATCTGTGACGTACGGGCACGCGCCGTGGCCcagcaacagcagcaaacaCTCAGGGCGCGCGAGGTCGCACGCCAGATGTAGCGCCGTTTTGCCTCCCTCTGCGTGCGCGCACCCGCGGTGATTCAACAGCAGCTTTTTCTCGCCTTCGTCCGCGAAGTCCTTGAGGGTGTCCATCATGGTTTTGAGAATGCTCGTGCGGTTGTAGCGCACGGCCACGGCGACATGCGGGGTGGCGGAGTGCGCGCAGCAGCGGAAGCTCGCGCTCGGCATGGCCAGCGCGTGCACGGAGTAGCGCTGGAGCAGGTGGCGCGCGTACTGCTGGTGGTCGTGGACGAGCGCGTAGAGCAGCGCTTCGGACGGCGAGAAAGCGCATGCGCGACCTTCGTCTTCCCAGTGGAACGCTTCAGTGGCGCGGATGTCCTCCAGCAGCCACACCGGCAGCAGATCCCGCACAGCCTGATAGAAAGCTAGCGAGGTTCTCTGGCACTGTTTTTCAGACTTGTAATCTGCGCGGCGCTCGTACATTCCCAGATCCAGAGGCATCGTTACTCTCTTCTACCCCCTTTTTTGCACTCTATTGTGATTTAAAGCTGCTCTTGAGATGTTTGGGTGTTTTTGCAGGGTTGACTTTGAGGCCAGTGTGTAACACTGAAACATCTGCAGACTTACTGGAGGTAGTGTATAGTTGTTATTTGGACTGTCCTGCACAGCGTTAGCAGTTAACAGTTACACTCAGTGATCAAGCAGCCAAGAGGACAGTTCAGTAACCTCAGTAATCCGTGAGAGTATTAACCAAGACAAGAACGGCTTGTTTACTGATGATGCTGCTTTCTTCCGCCGTCAAAGCCCGCTTCAATCCCACCcagctgtttttatatttcagtgcAGCGACACgccccctcccctccccctcccGCCTcaacgcacacacgcgcgcgcgcgcacgtgTCTCATTGGCCACGAATATAAGCATGTAGATGTGACGTCAAGAAGGTCTGAATGACCTGTAAAACTTTCCATATAGAGAAGATCAGCAGTGAGAAAGCTCCTTCACTAATACTAGACATGAGTCTGTACAAAGCCCAGGAACTGAgattttagaaaaacaaaaccttctCTGCCCTCCACTTAAAGGATACGACCTAAAGAATTCACTTTTCCCATCTTACTACTGTGATAATATACCAACACCTTTACTGTCATTGTGTAAGTGCAACGAGATTCAGTGTCCAGTTCCCCATCAAGCTGTGTTAggtacattaataataaaaataactaattaCACATAccaaccctttcatgcataaattaatttaaaatatagacAGTTGCTCAgatgtgtttttcttatttaaaactgaatttcaactttttctaaatatcacatttaaaaaaggaaatggacTGTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_004579003.1 lncRNA upstream 74458 21104943 ~ 21107399 (+) True LOC117598333
TU200101 lncRNA upstream 339683 20832846 ~ 20842174 (+) False G169046
TU200106 lncRNA upstream 339683 20832846 ~ 20842174 (+) False G169046
TU200109 lncRNA upstream 339683 20832846 ~ 20842174 (+) True G169046
TU200100 lncRNA upstream 358474 20741344 ~ 20823383 (+) True G169045
TU200432 lncRNA downstream 7388 21191166 ~ 21196292 (+) True G169320
TU200673 lncRNA downstream 355472 21539250 ~ 21539498 (+) True G169543
TU200723 lncRNA downstream 467863 21651641 ~ 21651902 (+) True G169575
TU200820 lncRNA downstream 577015 21760793 ~ 21761231 (+) False im:7136021
TU200832 lncRNA downstream 584386 21768164 ~ 21768718 (+) True G169652
XM_026919026.2 mRNA upstream 298 21144875 ~ 21181559 (+) True tecpr2
XM_026918989.2 mRNA upstream 285446 20843798 ~ 20896411 (+) False eif2ak4
XM_026918986.2 mRNA upstream 285446 20845104 ~ 20896411 (+) False eif2ak4
XM_026918987.2 mRNA upstream 285446 20845104 ~ 20896411 (+) False eif2ak4
XM_026918988.2 mRNA upstream 286252 20845104 ~ 20895605 (+) True eif2ak4
XM_034308203.1 mRNA downstream 10140 21193918 ~ 21205161 (+) False rcor1
XM_034308199.1 mRNA downstream 10197 21193975 ~ 21205161 (+) True rcor1
XM_034308200.1 mRNA downstream 10197 21193975 ~ 21205161 (+) False rcor1
XM_034308198.1 mRNA downstream 10198 21193976 ~ 21205161 (+) False rcor1
XM_026919366.2 mRNA downstream 10198 21193976 ~ 21205161 (+) False rcor1
XR_004578912.1 other upstream 650635 20528519 ~ 20531222 (+) False LOC113530103
XR_004578913.1 other upstream 650635 20528525 ~ 20531222 (+) False LOC113530103
XR_004578914.1 other upstream 650635 20528527 ~ 20531222 (+) False LOC113530103
XR_004578905.1 other upstream 653906 20521595 ~ 20527951 (+) False LOC113530103
TU200725 other downstream 486129 21669907 ~ 21674461 (+) True G169577
TU200872 other downstream 635503 21819281 ~ 21820059 (+) True G169692
XR_004578924.1 other downstream 1678029 22861807 ~ 23022395 (+) False LOC113533992
XR_004578925.1 other downstream 1678032 22861810 ~ 23022395 (+) False LOC113533992
TU201530 other downstream 1678249 22862027 ~ 22890770 (+) True LOC113533992

Expression Profile