RNA id: TU200725



Basic Information


Item Value
RNA id TU200725
length 709
RNA type TUCP
GC content 0.47
exon number 2
gene id G169577
representative True

Chromosome Information


Item Value
chromosome id NC_047604.1
NCBI id CM018550.1
chromosome length 29376037
location 21669907 ~ 21674461 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence


AGGAGAGCAGATGGAGGGCAATTCTGAGAGGATCTCTAAAGCCAAGGAGATCAGAGTGCAGTCGCTGTCACTTAGGGAGGAGACTATACCTCCCTGTCCTCTGGGACTGCCTGCCAGTCGAGGACTGAGTTGTGGAAGTTTCCGTAGTAGTGTGCAAAGACACAGCTGCAGAGCTCCAAACACCAAAGACTTTCCAGGAACCAGGCCGCCAGTGTCCCGGCCCTCACCAAACTCAGGCACTGTCTCCTTCTCAGCTGCACCATCATCCACTGAGCACAAACGGTGTAAActacacatgctactcctgagatatcagtgatcctgaccccttctgctctctggacctgcctgatccatcctgatgccctactactggttggagttctcatcgactggaaatcactcgctgctgctgaggatgaccCCAACATGGACAGtctgaagatcactgagattactgaggatggtaccacttaaaaaccatgatgACGACTTTGGACCACAATTCATATcaattgccacaaacagttttgcactcaagtctctatcagtgaacagttgagtGTTAAGtacaacaaaacagacttcatgtgaaaactgtatggaatttcctggttacaaaattgcaatatttattcatgtagtacacagttataaaaaggaattttttttataactgtggatgggttcccttttgagtctggttcct

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU200723 lncRNA upstream 18005 21651641 ~ 21651902 (+) True G169575
TU200673 lncRNA upstream 130409 21539250 ~ 21539498 (+) True G169543
TU200432 lncRNA upstream 473615 21191166 ~ 21196292 (+) True G169320
TU200384 lncRNA upstream 486129 21181857 ~ 21183778 (+) True G169287
XR_004579003.1 lncRNA upstream 562508 21104943 ~ 21107399 (+) True LOC117598333
TU200820 lncRNA downstream 86332 21760793 ~ 21761231 (+) False im:7136021
TU200832 lncRNA downstream 93703 21768164 ~ 21768718 (+) True G169652
XR_004578967.1 lncRNA downstream 167155 21841616 ~ 21843598 (+) True LOC117598284
TU201035 lncRNA downstream 415013 22089474 ~ 22089698 (+) True G169850
TU201038 lncRNA downstream 418525 22092986 ~ 22093240 (+) True G169853
XM_026919473.2 mRNA upstream 71242 21590408 ~ 21598665 (+) False ap4s1
XM_026919469.2 mRNA upstream 71242 21590409 ~ 21598665 (+) True ap4s1
XM_026919472.2 mRNA upstream 71242 21590409 ~ 21598665 (+) False ap4s1
XM_026919470.2 mRNA upstream 71242 21591518 ~ 21598665 (+) False ap4s1
XM_026919468.2 mRNA upstream 113476 21550393 ~ 21556431 (+) True coch
XM_034308104.1 mRNA downstream 86310 21760771 ~ 21766373 (+) True im:7136021
XM_026919377.2 mRNA downstream 86313 21760774 ~ 21766373 (+) False im:7136021
XM_034308084.1 mRNA downstream 472665 22147126 ~ 22166909 (+) False LOC113529717
XM_034308085.1 mRNA downstream 472984 22147445 ~ 22166909 (+) False LOC113529717
XM_034308086.1 mRNA downstream 474240 22148701 ~ 22170590 (+) False LOC113529717
XR_004578908.1 other upstream 1138685 20521595 ~ 20531222 (+) False LOC113530103
XR_004578910.1 other upstream 1138685 20521595 ~ 20531222 (+) False LOC113530103
XR_004578911.1 other upstream 1138685 20521595 ~ 20531222 (+) False LOC113530103
XR_004578909.1 other upstream 1138685 20521595 ~ 20531222 (+) False LOC113530103
XR_004578912.1 other upstream 1138685 20528519 ~ 20531222 (+) False LOC113530103
TU200872 other downstream 144820 21819281 ~ 21820059 (+) True G169692
XR_004578924.1 other downstream 1187346 22861807 ~ 23022395 (+) False LOC113533992
XR_004578925.1 other downstream 1187349 22861810 ~ 23022395 (+) False LOC113533992
TU201530 other downstream 1187566 22862027 ~ 22890770 (+) True LOC113533992
trnah-gug_10 other downstream 2287523 23961984 ~ 23962055 (+) True trnah-gug_10

Expression Profile