RNA id: TU201035


Basic Information

Item Value
RNA id TU201035
length 225
lncRNA type inter_gene
GC content 0.38
exon number 1
gene id G169850
representative True

Chromosome Information

Item Value
chromosome id NC_047604.1
NCBI id CM018550.1
chromosome length 29376037
location 22089474 ~ 22089698 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GATGACTGTATGCCTGACCTAGTGGGTAAACTATTATGCATATGACCAATAAGTCAGAACAAAAGTACCGTTGTTTTCCTTTAACTAACCATAAACATCTCAGTACATACAAGACATATGGATAAAACAGTGTTATTGGATATTTCACGTTGTAATTGGCAGAGATGTACTGGCaaagtacagtatgtgtaaGGACCAAACCACAGACCTACAGTTCTAGCTCCA

Function

GO: NA

KEGG:

id description
ko04713 Circadian entrainment

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_004578967.1 lncRNA upstream 245876 21841616 ~ 21843598 (+) True LOC117598284
TU200832 lncRNA upstream 320756 21768164 ~ 21768718 (+) True G169652
TU200820 lncRNA upstream 328243 21760793 ~ 21761231 (+) False im:7136021
TU200723 lncRNA upstream 437572 21651641 ~ 21651902 (+) True G169575
TU200673 lncRNA upstream 549976 21539250 ~ 21539498 (+) True G169543
TU201038 lncRNA downstream 3288 22092986 ~ 22093240 (+) True G169853
TU201200 lncRNA downstream 7672 22097370 ~ 22097571 (+) True G170012
XR_004578964.1 lncRNA downstream 186414 22276112 ~ 22279828 (+) True LOC117598281
TU201267 lncRNA downstream 197159 22286857 ~ 22296054 (+) True G170076
TU201266 lncRNA downstream 219807 22309505 ~ 22313365 (+) True G170075
XM_034308104.1 mRNA upstream 323101 21760771 ~ 21766373 (+) True im:7136021
XM_026919377.2 mRNA upstream 323101 21760774 ~ 21766373 (+) False im:7136021
XM_026919469.2 mRNA upstream 490809 21590409 ~ 21598665 (+) True ap4s1
XM_034308084.1 mRNA downstream 57428 22147126 ~ 22166909 (+) False LOC113529717
XM_034308085.1 mRNA downstream 57747 22147445 ~ 22166909 (+) False LOC113529717
XM_034308086.1 mRNA downstream 59003 22148701 ~ 22170590 (+) False LOC113529717
XM_034308088.1 mRNA downstream 59003 22148701 ~ 22168541 (+) False LOC113529717
XM_026919113.2 mRNA downstream 59003 22148701 ~ 22166909 (+) False LOC113529717
TU200872 other upstream 269415 21819281 ~ 21820059 (+) True G169692
TU200725 other upstream 415013 21669907 ~ 21674461 (+) True G169577
XR_004578912.1 other upstream 1558252 20528519 ~ 20531222 (+) False LOC113530103
XR_004578924.1 other downstream 772109 22861807 ~ 23022395 (+) False LOC113533992
XR_004578925.1 other downstream 772112 22861810 ~ 23022395 (+) False LOC113533992
TU201530 other downstream 772329 22862027 ~ 22890770 (+) True LOC113533992
trnah-gug_10 other downstream 1872286 23961984 ~ 23962055 (+) True trnah-gug_10
trnah-gug_11 other downstream 1875150 23964848 ~ 23964919 (+) True trnah-gug_11

Expression Profile