RNA id: TU201475


Basic Information

Item Value
RNA id TU201475
length 2033
lncRNA type inter_gene
GC content 0.38
exon number 1
gene id G170266
representative True

Chromosome Information

Item Value
chromosome id NC_047604.1
NCBI id CM018550.1
chromosome length 29376037
location 22765723 ~ 22767755 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GGCTGATCAAGTTTATTTGATCGGTTTAGAAAAGACaatgtttacacaaacataaaatattaaatcactCTAGTACACTAAAATATTACCACAATGATATTCCATTACCATACTTATATTCTTTCTTAGCATTgtcattattaattttactaattacatttttttaagttttaagtttcctttcctgtgtttttagtttttgaacattacattttacattaaagaaTCTTTTGAAAACATAATGAACAACATGGAGTAGAAGGTCAGGAGTGTAATCCTCTGTAAGGCGCAGGAGTTTGCATCAATTTTATGTAGCGTTTTGCAATCCATCAGCTATTATTCTTAGGCACAATATTTGGACCCGTGTTCCACATGGGcaaagacacagagaaacaccGACAAATAATGTAGTCCAACTactgtgaaatattttataaagcatgTTTTTAGAAGCACAAGACAACAAAGGAAAGTAAAAGCTTGTGTTTGGAGTGTGCGGTGGCATATTAATGTTCAGAGAATAAGAACAGAGGAGCAGAGGTGTATGATCAATGTAAAGATGCTGTCAGTGTTCATACAGGAGGAAAAACATCACAGGAAAACAGTGCACAAGCTGAAGTTGGGAGTTCAAATTTAGGATTCATTGTTTAAAGCTGCCTGTAgtgctgctttttttaatcatcttatctgaaaaaacaaatgtgGTTGCCTTCATTTCAGCTGGATGTTTAGGGAAAATACCTGAAGTGACATGTTTGCTAATCCTGTTTGTCCagttatatatatgtacagtcaggtccggaagaatttggacaatgacagagtttttgtgattttgcctttaagagacagcaaaaacattaggtgtggccaaatcaacagttgggtacattcttaaaaagaaagaaagcactggtgagctcaacaacatcgaaaggcctggaagaccgtggaagacaactaaagtggatgattgcagatgATTGCAGAAGTCaggaatactctggagaaggtaggcatatcattgtcaaaatctacaatcaagacacgccttcataaatgtaaataaatagggtttacaacaaggtgcaaaccaccggtaacaggaaagccagattagactttgccagaaaacatctaaaaaagcctcacATGTtatggaataagattctttgaactgatgaaaccaagattaacttgcaccagaatgataggaagagaaatgtatggcaaaagaaaagaacagctcatgatccaaagtataccacatcatgtgtcaaacatggtggaggcattgttatggcatgggcatgcaaggctgccaatggaacgggctcactggtgtttattgatgatgtgactgctgatagaagtagcaagatgaattctgaggtgtatagggctatactctctgctcacattcagccaaatgctacaaaactgaccctaaacatactgcgaaagcaactcaagactttttgaaggcaaagaaatggaatattcttcaatggccaggtcagtcgcctgatctcaacccaatagagcatgcttttcatttactgaagacaagactgaaggcagaaagacccacaaacaagcggCAACTGAaagtggctgcagtgaaggcctggcaaagcatcttcAGGGAGGAAACTTAGAacttgagttttgagaacacgggctccagacttcaggcagtcattgactacaaaggattttcatccaattattaaaattatgtttatatttacaattatatcactttgtccaaatacctttgagcccctgaaaatggaggtactttgttaaaaatggctgtgattccataaatgccatatttttgtggaacctcttaaaataaagctgactttagtctacacttcgatcacatcttgattgttttatttcaaatctattgtcatggtgtataaaggcaaaatcacagaaactgtcactgtccaaatacttctggacctgactgtgtgtatacacacacacacacacacacacacacacacacacacacacacaca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU201470 lncRNA upstream 6247 22759241 ~ 22759476 (+) True G170261
TU201469 lncRNA upstream 8279 22757240 ~ 22757444 (+) True G170260
XR_004578969.1 lncRNA upstream 348872 22416176 ~ 22416851 (+) True LOC117598286
XR_004579042.1 lncRNA upstream 354361 22411162 ~ 22411362 (+) True LOC113530233
TU201277 lncRNA upstream 379573 22385939 ~ 22386150 (+) True G170083
TU201558 lncRNA downstream 215209 22982964 ~ 22983351 (+) True G170323
TU201559 lncRNA downstream 216192 22983947 ~ 22984361 (+) True G170324
TU201560 lncRNA downstream 216822 22984577 ~ 22984930 (+) True G170325
TU201509 lncRNA downstream 217339 22985094 ~ 22991899 (+) True G170295
TU201508 lncRNA downstream 218941 22986696 ~ 22991899 (+) False G170295
XM_026919102.2 mRNA upstream 511455 22241018 ~ 22254268 (+) True LOC113529714
XM_034307809.1 mRNA downstream 94052 22861807 ~ 23022395 (+) False LOC113533992
XM_034307804.1 mRNA downstream 94052 22861807 ~ 22982148 (+) False LOC113533992
XM_034307806.1 mRNA downstream 94052 22861807 ~ 22982148 (+) False LOC113533992
XM_034307808.1 mRNA downstream 94052 22861807 ~ 22982148 (+) False LOC113533992
XM_034307810.1 mRNA downstream 94053 22861808 ~ 23022395 (+) False LOC113533992
TU200872 other upstream 945664 21819281 ~ 21820059 (+) True G169692
TU200725 other upstream 1091262 21669907 ~ 21674461 (+) True G169577
XR_004578912.1 other upstream 2234501 20528519 ~ 20531222 (+) False LOC113530103
XR_004578924.1 other downstream 94052 22861807 ~ 23022395 (+) False LOC113533992
XR_004578925.1 other downstream 94055 22861810 ~ 23022395 (+) False LOC113533992
TU201530 other downstream 94272 22862027 ~ 22890770 (+) True LOC113533992
trnah-gug_10 other downstream 1194229 23961984 ~ 23962055 (+) True trnah-gug_10
trnah-gug_11 other downstream 1197093 23964848 ~ 23964919 (+) True trnah-gug_11

Expression Profile