RNA id: XM_034307806.1


Basic Information

Item Value
RNA id XM_034307806.1
length 3705
RNA type mRNA
GC content 0.47
exon number 25
gene id LOC113533992
representative False

Chromosome Information

Item Value
chromosome id NC_047604.1
NCBI id CM018550.1
chromosome length 29376037
location 22861807 ~ 23022395 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TCAGTCGGGTGTGTTGTGAGCAggtaaaacactaaaatgtgtgaGACTGGGGTACACCAGTACCAGGCTTGGGAACCTATGCTTTACGGCAATCTGTATATGTACGATTTCCGGATTTCTTTTGTCACCTTCGTTCGAGTCACTTGTCGTTCGTCTCTTCAGGCCTGACTCGGTTCTCGCGTCTTGCCAATCCCCGCGGTTCGAGGCGCTCGGCGCTCGGCTCTTGTCTCCGTGAGTCTGAGGAACGCTTGGGAACATGGCGTCAGACGGAATGATTTTAACTAACCATGACCACCAAATTCGAGTTGGAATCTTGACAGTGAGTGACAGCTGTTTCAGAAACCTTGCTGAAGACCGAAGTGGAATCAACCTTAAAGATCTCGTTCATGACCCATCCTTGCTTGGAGGCATAATATCTGCATACAAAATAGTACCTGATGAGATAGATGAAATCAAGGAGACTCTAGTGGACTGGTGTGACGAGAAAGAGCTTAACCTTATCTTGACTACTGGTGGAACTGGCTTTGCTCCTCGTGATGTCACACCAGAGGCCACGAGGGAAGTGATTGAACGTGAAGCTCCAGGGATGGCCCTTGCCATGCTCATGGGCTCATTAAATGTCACACCTCTCGGCATGCTGTCCAGACCTGTATGCGGCATCAGAGGCAAAACTCTCATCATTAATCTACCTGGCAGCAAGAAAGGCTCACAGGAGTGCTTCCAGTTCATCTTGCCTGCCCTGCCTCATGCCATCGACCTTCTGCGTGATGCTATAGTGAAAGTGAAGGAGGTTCACAATGCACTGGAGGACCTGCCCTCACCCCCACCACCCCTCTCACCTCCCCCTGTCACCAGCCCACATAAGCAGACTGAGGAAAAGGGCATTCAGTgcgaggaagaagaggaggaaaagaaggaCAGTGGAGTTGCCTCGACCGAGGATAGTGGCTCCTCACATATCACAGCAGCGGCTATTGCTGCAAAGCATGTTCATCTTCAGAGTGTATTCCATCCCACCCATTCTGTTGTAATGGCCAAAGGGGGGCAGCCATTGACTTGCTTCATCCCTCCCACCACCCTTTCCTCTCATTTCACCTGCTCCTGTGGAGACAAGATTCCAGACGCTATTATTTCTCGGGGCGTTCAGGTGTTGCCACGGGACACAGCCTCTCTCAGTACCACCCCCTCAGAGTCTCCCCGTGCTCAGCAGTCCCGCCTGTCCACTGCCTCCTGCCCCACTCCCAAAGCATCACGGAGAGAGTTCAGGGCACACTTGGATGAGGTCATCACGCTCCAGTCAAGGTACTCTACCTTGGACCAGGTGCAGTCGCGGTGTGGCAGCAAAGAGAACATCCTAAGGGCAAGTCATAGTGCAGTAGACATCACAAAGGTGGCACGAAGACACCGCATGTCCCCTTTCCCCCTTACCTCCATGGACAAGGCCTTCATCACTGTACTGGAGATGACTCCTGTTCTTGGCACTGAGCTCATCAACTATAGAGATGGAATGGGTCGAGTCTTAGCTCAGGATGTCTATGCCAAAGACAGTCTGCCTCCTTTTCCAGCCTCAGTCAAAGATGGCTATGCTGTTCGAGCTGCTGATGGCCCAGGAGATAGATTTCTCATCGGGGAGTCCCAGGCTGGGGAGCAGcCTACTCACACAGTGATGCCAGGCCAGGTAATGAGGGTGACGACGGGAGCTCCTATCCCATGTGGAGCAGATGCTGTAGTGCAAGTAGAAGATACAGAGTTACTGAGGGAGTCTGAAGACGGCACAGAGGAATTGGAGGTGCGGATTCTGGTGCAGGCACGCCCAGGCCAGGACATTAGGCCAATTGGTCATGACATAAAACGTGGTGAATGTGTGCTAGCCAAAGGAACACACATGGGCCCATCTGAAATTGGCCTGTTGGCCACGGTGGGAATCACAGAGGTGGAGGTGCACAAGTTCCCTGTTGTGGCAGTCATGTCTACTGGCAATGAATTGTTGAATCCTGAAGATGACCTCCACCCAGGGAAGATCAGGGACAGTAACCGCTCCACACTGCTGGCTACCATCCAAGAGCATGGCTACCCCACGATTAACCTTGGAATTGTCGGAGACAACCCAGATGACCTGTTGAATGCCCTGAATGAGGGAATAAGTCGTGCAGATGTCATCATCACATCTGGAGGAGTGTCCATGGGAGAGAAGGACTACTTGAAGCAGGTTCTGGACATTGACCTCCATGCCCAAATCCACTTTGGTCGGGTGTTTATGAAGCCAGGTCTTCCCACTACATTTGCCACCTTAGACATCGATGGCACACGAAAGCTCATCTTTGCCCTGCCAGGTAATTTCACCTACAGAAACACAGGGGTGACTTTCCTTGAGGCCATGCCCATGAGCGACAGCGAGGCAAGCAGGCTACCCATATCTCCTCCCCCACGCAGAAGTAACCCAGTGTCAGCAGTTGTCACCTGTAATCTCTTTGTTATCCCCGCGTTGAGAAAAATGCAGGGTATCCTGGACCCAAGGCCAACAATCATCAAAGCCAGGCTCTCCTGTGATGTTAAGTTGGACCCACGTCCAGAGTACCACCGCTGTATATTGACATGGCATCACCAAGAGCCCCTGCCTTGGGCACAGAGTACAGGAAATCAAATGAGTAGTCGGCTAATGAGCATGCGCAGTGCCAACGGCCTTCTGATGTTGCCTCCTAAAACAGAGCAATACGTGGAGCTGCACAAAGGCGAGGTGGTGGACGTCATGGTTATAGGGCGGTTATGATGTCATCAAATAGTatataaacagaaaagaaaaagtggtgcATGTCCAcatatcatttattatattgtaatatgcAATGGcacagttatttttattatttttttctatttggtCAAAAGTTGCTGATGTATAATCAACAttgcaaacaaaagcaaactTAAAAAGTTATGGATAGACATAGTATTTCAGCAAGAGAGggagtatgtatgtgtgtatatatatgtgtatatatatatatatatatatatacacatacatacatactgtggATGTAAAAAGTCTAAACACCcatgttaaaattgcaggtttttgtgatgtaaaaaaaaaaaatttgaaggGATGTCCTGTTTTTGGTAATGTCagtgtggtgccccattttctccacttcatAATGATGGCCTTCTCAGTGTTTAATGGTACAgctaatgtttagaaaattcTTTTGACCTTCAGGCGTTCTTTTGTACCTCCTGAAGGAGACCTTTTAACAGGGAGATtccgtacatgctttgtaagatCTTTGCGGACCATGGGTTCAGCAGCCGGATGAAACCAAAAAGacgtcaagaaaatcctacagaaaagctgatctttatttgggctTAATCAGAATTGCTTtgttgatgacaggtgtatgataattacttttaaacatttgtttgaaTGTAATTGGTTAATTCTgggcacagtcacatgccccattataaatgGGGGTGCACACTTAGGCCACcagtttaatgtattttttctttttcttttttctcccctaaaacatttctatttttgattttcacttgaattttgttggttgctattattatattaaaaggGGGAAAAGATCTAATAtgattaatcttggtttcatttttcatcacagcggcaaaaacctgcaattttaacggggtgtgtagactttttatatccactgtatatgt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU201475 lncRNA upstream 94052 22765723 ~ 22767755 (+) True G170266
TU201477 lncRNA upstream 94107 22765723 ~ 22767700 (+) False G170266
TU201470 lncRNA upstream 102331 22759241 ~ 22759476 (+) True G170261
TU201469 lncRNA upstream 104363 22757240 ~ 22757444 (+) True G170260
XR_004578969.1 lncRNA upstream 444956 22416176 ~ 22416851 (+) True LOC117598286
TU201558 lncRNA downstream 816 22982964 ~ 22983351 (+) True G170323
TU201559 lncRNA downstream 1799 22983947 ~ 22984361 (+) True G170324
TU201560 lncRNA downstream 2429 22984577 ~ 22984930 (+) True G170325
TU201509 lncRNA downstream 2946 22985094 ~ 22991899 (+) True G170295
TU201508 lncRNA downstream 4548 22986696 ~ 22991899 (+) False G170295
XM_026919102.2 mRNA upstream 607539 22241018 ~ 22254268 (+) True LOC113529714
XM_026926270.2 mRNA downstream 42508 23024656 ~ 23050841 (+) False mpp5a
XM_034307814.1 mRNA downstream 42508 23024656 ~ 23050841 (+) False mpp5a
XM_026926267.2 mRNA downstream 42509 23024657 ~ 23052674 (+) True mpp5a
XM_026926268.2 mRNA downstream 42787 23024935 ~ 23050841 (+) False mpp5a
XM_026926269.2 mRNA downstream 55885 23038033 ~ 23050841 (+) False mpp5a
TU200872 other upstream 1041748 21819281 ~ 21820059 (+) True G169692
TU200725 other upstream 1187346 21669907 ~ 21674461 (+) True G169577
XR_004578912.1 other upstream 2330585 20528519 ~ 20531222 (+) False LOC113530103
trnah-gug_10 other downstream 979836 23961984 ~ 23962055 (+) True trnah-gug_10
trnah-gug_11 other downstream 982700 23964848 ~ 23964919 (+) True trnah-gug_11
trnay-aua other downstream 982886 23965034 ~ 23965106 (+) True trnay-aua
trnah-gug_12 other downstream 1444621 24426769 ~ 24426840 (+) True trnah-gug_12
trnar-acg_2 other downstream 1444807 24426955 ~ 24427027 (+) True trnar-acg_2

Expression Profile