RNA id: XM_034307809.1


Basic Information

Item Value
RNA id XM_034307809.1
length 2742
RNA type mRNA
GC content 0.52
exon number 25
gene id LOC113533992
representative False

Chromosome Information

Item Value
chromosome id NC_047604.1
NCBI id CM018550.1
chromosome length 29376037
location 22861807 ~ 23022395 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TCAGTCGGGTGTGTTGTGAGCAggtaaaacactaaaatgtgtgaGACTGGGGTACACCAGTACCAGGCTTGGGAACCTATGCTTTACGGCAATCTGTATATGTACGATTTCCGGATTTCTTTTGTCACCTTCGTTCGAGTCACTTGTCGTTCGTCTCTTCAGGCCTGACTCGGTTCTCGCGTCTTGCCAATCCCCGCGGTTCGAGGCGCTCGGCGCTCGGCTCTTGTCTCCGTGAGTCTGAGGAACGCTTGGGAACATGGCGTCAGACGGAATGATTTTAACTAACCATGACCACCAAATTCGAGTTGGAATCTTGACAGTGAGTGACAGCTGTTTCAGAAACCTTGCTGAAGACCGAAGTGGAATCAACCTTAAAGATCTCGTTCATGACCCATCCTTGCTTGGAGGCATAATATCTGCATACAAAATAGTACCTGATGAGATAGATGAAATCAAGGAGACTCTAGTGGACTGGTGTGACGAGAAAGAGCTTAACCTTATCTTGACTACTGGTGGAACTGGCTTTGCTCCTCGTGATGTCACACCAGAGGCCACGAGGGAAGTGATTGAACGTGAAGCTCCAGGGATGGCCCTTGCCATGCTCATGGGCTCATTAAATGTCACACCTCTCGGCATGCTGTCCAGACCTGTATGCGGCATCAGAGGCAAAACTCTCATCATTAATCTACCTGGCAGCAAGAAAGGCTCACAGGAGTGCTTCCAGTTCATCTTGCCTGCCCTGCCTCATGCCATCGACCTTCTGCGTGATGCTATAGTGAAAGTGAAGGAGGTTCACAATGCACTGGAGGACCTGCCCTCACCCCCACCACCCCTCTCACCTCCCCCTGTCACCAGCCCACATAAGCAGACTGAGGAAAAGGGCATTCAGTgcgaggaagaagaggaggaaaagaaggaCAGTGGAGTTGCCTCGACCGAGGATAGTGGCTCCTCACATATCACAGCAGCGGCTATTGCTGCAAAGCATGTTCATCTTCAGAGTGTATTCCATCCCACCCATTCTGTTGTAATGGCCAAAGGGGGGCAGCCATTGACTTGCTTCATCCCTCCCACCACCCTTTCCTCTCATTTCACCTGCTCCTGTGGAGACAAGATTCCAGACGCTATTATTTCTCGGGGCGTTCAGGTGTTGCCACGGGACACAGCCTCTCTCAGTACCACCCCCTCAGAGTCTCCCCGTGCTCAGCAGTCCCGCCTGTCCACTGCCTCCTGCCCCACTCCCAAAGCATCACGGAGAGAGTTCAGGGCACACTTGGATGAGGTCATCACGCTCCAGTCAAGGTACTCTACCTTGGACCAGGTGCAGTCGCGGTGTGGCAGCAAAGAGAACATCCTAAGGGCAAGTCATAGTGCAGTAGACATCACAAAGGTGGCACGAAGACACCGCATGTCCCCTTTCCCCCTTACCTCCATGGACAAGGCCTTCATCACTGTACTGGAGATGACTCCTGTTCTTGGCACTGAGCTCATCAACTATAGAGATGGAATGGGTCGAGTCTTAGCTCAGGATGTCTATGCCAAAGACAGTCTGCCTCCTTTTCCAGCCTCAGTCAAAGATGGCTATGCTGTTCGAGCTGCTGATGGCCCAGGAGATAGATTTCTCATCGGGGAGTCCCAGGCTGGGGAGCAGcCTACTCACACAGTGATGCCAGGCCAGGTAATGAGGGTGACGACGGGAGCTCCTATCCCATGTGGAGCAGATGCTGTAGTGCAAGTAGAAGATACAGAGTTACTGAGGGAGTCTGAAGACGGCACAGAGGAATTGGAGGTGCGGATTCTGGTGCAGGCACGCCCAGGCCAGGACATTAGGCCAATTGGTCATGACATAAAACGTGGTGAATGTGTGCTAGCCAAAGGAACACACATGGGCCCATCTGAAATTGGCCTGTTGGCCACGGTGGGAATCACAGAGGTGGAGGTGCACAAGTTCCCTGTTGTGGCAGTCATGTCTACTGGCAATGAATTGTTGAATCCTGAAGATGACCTCCACCCAGGGAAGATCAGGGACAGTAACCGCTCCACACTGCTGGCTACCATCCAAGAGCATGGCTACCCCACGATTAACCTTGGAATTGTCGGAGACAACCCAGATGACCTGTTGAATGCCCTGAATGAGGGAATAAGTCGTGCAGATGTCATCATCACATCTGGAGGAGTGTCCATGGGAGAGAAGGACTACTTGAAGCAGGTTCTGGACATTGACCTCCATGCCCAAATCCACTTTGGTCGGGTGTTTATGAAGCCAGGTCTTCCCACTACATTTGCCACCTTAGACATCGATGGCACACGAAAGCTCATCTTTGCCCTGCCAGGTAATTTCACCTACAGAAACACAGGGGTGACTTTCCTTGAGGCCATGCCCATGAGCGACAGCGAGGCAAGCAGGCTACCCATATCTCCTCCCCCACGCAGAAAACCATCTCTTACACTGAGAACACGGGGGAACAGATTTACCTGGACCTCCTCTCCGTCCGCAGCTGACACTCGACCACATCTTCGCTGCCACACAGGCAAACTGCAGCATCCGGTTCAGACTGATCCCTCCCCACTGCTGGGCTGATGAGTTTGACGACCTGGAACAGTTCGTCAGTAGACATGGCACTGGATCATAATAGCAGCATCAGCTCTATAGTCACTGGCATGGCAAACTGCAACATCACCACTTTTGCTGGTCCCAAGGATTGACTTTCCGCTAGCATGCAGAGCCAATCCCTGATGAGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU201475 lncRNA upstream 94052 22765723 ~ 22767755 (+) True G170266
TU201477 lncRNA upstream 94107 22765723 ~ 22767700 (+) False G170266
TU201470 lncRNA upstream 102331 22759241 ~ 22759476 (+) True G170261
TU201469 lncRNA upstream 104363 22757240 ~ 22757444 (+) True G170260
XR_004578969.1 lncRNA upstream 444956 22416176 ~ 22416851 (+) True LOC117598286
TU201828 lncRNA downstream 126279 23148674 ~ 23149505 (+) True G170567
TU201829 lncRNA downstream 127147 23149542 ~ 23150084 (+) True G170568
TU201871 lncRNA downstream 352843 23375238 ~ 23375438 (+) True G170610
TU202007 lncRNA downstream 755874 23778269 ~ 23779227 (+) True G170717
TU202006 lncRNA downstream 756928 23779323 ~ 23782089 (+) True G170716
XM_026919102.2 mRNA upstream 607539 22241018 ~ 22254268 (+) True LOC113529714
XM_026919103.2 mRNA upstream 607539 22241018 ~ 22254268 (+) False LOC113529714
XM_026919104.2 mRNA upstream 607539 22241728 ~ 22254268 (+) False LOC113529714
XM_026919105.2 mRNA upstream 607539 22241817 ~ 22254268 (+) False LOC113529714
XM_026919106.2 mRNA upstream 607539 22241817 ~ 22254268 (+) False LOC113529714
XM_026926270.2 mRNA downstream 2261 23024656 ~ 23050841 (+) False mpp5a
XM_034307814.1 mRNA downstream 2261 23024656 ~ 23050841 (+) False mpp5a
XM_026926267.2 mRNA downstream 2262 23024657 ~ 23052674 (+) True mpp5a
XM_026926268.2 mRNA downstream 2540 23024935 ~ 23050841 (+) False mpp5a
XM_026926269.2 mRNA downstream 15638 23038033 ~ 23050841 (+) False mpp5a
TU200872 other upstream 1041748 21819281 ~ 21820059 (+) True G169692
TU200725 other upstream 1187346 21669907 ~ 21674461 (+) True G169577
XR_004578912.1 other upstream 2330585 20528519 ~ 20531222 (+) False LOC113530103
trnah-gug_10 other downstream 939589 23961984 ~ 23962055 (+) True trnah-gug_10
trnah-gug_11 other downstream 942453 23964848 ~ 23964919 (+) True trnah-gug_11
trnay-aua other downstream 942639 23965034 ~ 23965106 (+) True trnay-aua
trnah-gug_12 other downstream 1404374 24426769 ~ 24426840 (+) True trnah-gug_12
trnar-acg_2 other downstream 1404560 24426955 ~ 24427027 (+) True trnar-acg_2

Expression Profile