RNA id: TU201701


Basic Information

Item Value
RNA id TU201701
length 388
lncRNA type inter_gene
GC content 0.39
exon number 1
gene id G170461
representative True

Chromosome Information

Item Value
chromosome id NC_047604.1
NCBI id CM018550.1
chromosome length 29376037
location 22982981 ~ 22983368 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

acagGGTAGGATACACAGTGTcctaaaagtctccatacataggggaaataatttttttttagcaaaatgtcttccacaattttacaaattatattacaatttttttttcaaatagccTTGAAAAGAATGCCTATGAAGgttttgaaatcattctcatggctggagcaggaagctgttgcaaggttgcaATTGACtataacaggaaacatggcaagcacatcacacacaacactgttgccaaacttattaacaaattcaaaatgacTTGAAGTGGAGAAGTGACATCCACGTCAACCGAGAACATCTACTcatgaaggcacaaccgacgtggtgctggcatacatcgTCCCCTAAGTATGGAGACCTTTGGGAcacagtgtatgtatgt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU201664 lncRNA downstream 215205 22765840 ~ 22767776 (-) True G170428
TU201336 lncRNA downstream 656534 22290481 ~ 22326447 (-) True G170129
TU201320 lncRNA downstream 726256 22255617 ~ 22256725 (-) True G170120
TU201208 lncRNA downstream 868231 22114395 ~ 22114750 (-) True G170020
TU201205 lncRNA downstream 871065 22111579 ~ 22111916 (-) True G170017
TU201716 lncRNA upstream 583 22983951 ~ 22984361 (-) True G170476
TU201718 lncRNA upstream 1715 22985083 ~ 22986622 (-) True G170478
TU201717 lncRNA upstream 3328 22986696 ~ 22991902 (-) True G170477
TU201819 lncRNA upstream 121867 23105235 ~ 23105945 (-) True G170558
TU201842 lncRNA upstream 165375 23148743 ~ 23150084 (-) False greb1
XM_026926437.2 mRNA downstream 148989 22767942 ~ 22833992 (-) False LOC113533941
XM_026926435.2 mRNA downstream 148989 22767942 ~ 22833992 (-) False LOC113533941
XM_026926433.2 mRNA downstream 148989 22767942 ~ 22833992 (-) False LOC113533941
XM_026926434.2 mRNA downstream 148989 22767942 ~ 22833992 (-) False LOC113533941
XM_026926432.2 mRNA downstream 148989 22767942 ~ 22833992 (-) False LOC113533941
XM_026926404.2 mRNA upstream 130000 23113368 ~ 23147738 (-) False lpin1
XM_026926407.2 mRNA upstream 130000 23113368 ~ 23140179 (-) False lpin1
XM_026926408.2 mRNA upstream 130000 23113368 ~ 23140179 (-) True lpin1
XM_026926020.2 mRNA upstream 165513 23148881 ~ 23179511 (-) True greb1
XM_034307870.1 mRNA upstream 251225 23234593 ~ 23265065 (-) False spata17
TU201673 other downstream 119214 22855494 ~ 22863767 (-) True G170435
TU201211 other downstream 867105 22115565 ~ 22115876 (-) True G170023
TU200304 other downstream 2165765 20814561 ~ 20817216 (-) False grem1b
XR_003403127.1 other downstream 2249929 20732930 ~ 20733052 (-) True LOC113530231
TU200198 other downstream 2417182 20564929 ~ 20565799 (-) True G169119
TU202681 other upstream 1817715 24801083 ~ 24807095 (-) False G171256
TU203072 other upstream 2275471 25258839 ~ 25259209 (-) False G171569
TU203074 other upstream 2275471 25258839 ~ 25259362 (-) True G171569
TU203284 other upstream 2595571 25578939 ~ 25582527 (-) True G171734
TU204658 other upstream 4916123 27899491 ~ 27910890 (-) True si:ch73-204p21.2

Expression Profile