RNA id: TU201722


Basic Information

Item Value
RNA id TU201722
length 237
lncRNA type intronic
GC content 0.38
exon number 1
gene id G170482
representative True

Chromosome Information

Item Value
chromosome id NC_047604.1
NCBI id CM018550.1
chromosome length 29376037
location 23003595 ~ 23003831 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CTTTTTTTAGGTGCTTTTTTAGCAGTCTAAGCTAgactttctgttcttgagtgttaccagtggttttaatcttgaggtaaaccatctgtatttacattcatgaaggcgtctcttgattgtagacatTGACAATGAAACACCTACCTCGTCGAGTGTGtttttgacttggctagatgttgcgaaggggtttttcttcaacaaggaaagaatgcTGTGATCATTTACTTTAGTTGGCTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU201509 lncRNA upstream 11696 22985094 ~ 22991899 (+) True G170295
TU201508 lncRNA upstream 11696 22986696 ~ 22991899 (+) False G170295
TU201560 lncRNA upstream 18665 22984577 ~ 22984930 (+) True G170325
TU201559 lncRNA upstream 19234 22983947 ~ 22984361 (+) True G170324
TU201558 lncRNA upstream 20244 22982964 ~ 22983351 (+) True G170323
TU201724 lncRNA downstream 2193 23006024 ~ 23019452 (+) True G170484
TU201828 lncRNA downstream 144843 23148674 ~ 23149505 (+) True G170567
TU201829 lncRNA downstream 145711 23149542 ~ 23150084 (+) True G170568
TU201871 lncRNA downstream 371407 23375238 ~ 23375438 (+) True G170610
TU202007 lncRNA downstream 774438 23778269 ~ 23779227 (+) True G170717
XM_034307811.1 mRNA upstream 21444 22879563 ~ 22982151 (+) False LOC113533992
XM_034307804.1 mRNA upstream 21447 22861807 ~ 22982148 (+) False LOC113533992
XM_034307806.1 mRNA upstream 21447 22861807 ~ 22982148 (+) False LOC113533992
XM_034307808.1 mRNA upstream 21447 22861807 ~ 22982148 (+) False LOC113533992
XM_034307807.1 mRNA upstream 21447 22861808 ~ 22982148 (+) False LOC113533992
XM_026926270.2 mRNA downstream 20825 23024656 ~ 23050841 (+) False mpp5a
XM_034307814.1 mRNA downstream 20825 23024656 ~ 23050841 (+) False mpp5a
XM_026926267.2 mRNA downstream 20826 23024657 ~ 23052674 (+) True mpp5a
XM_026926268.2 mRNA downstream 21104 23024935 ~ 23050841 (+) False mpp5a
XM_026926269.2 mRNA downstream 34202 23038033 ~ 23050841 (+) False mpp5a
TU201530 other upstream 112825 22862027 ~ 22890770 (+) True LOC113533992
TU200872 other upstream 1183536 21819281 ~ 21820059 (+) True G169692
TU200725 other upstream 1329134 21669907 ~ 21674461 (+) True G169577
XR_004578913.1 other upstream 2472373 20528525 ~ 20531222 (+) False LOC113530103
trnah-gug_10 other downstream 958153 23961984 ~ 23962055 (+) True trnah-gug_10
trnah-gug_11 other downstream 961017 23964848 ~ 23964919 (+) True trnah-gug_11
trnay-aua other downstream 961203 23965034 ~ 23965106 (+) True trnay-aua
trnah-gug_12 other downstream 1422938 24426769 ~ 24426840 (+) True trnah-gug_12
trnar-acg_2 other downstream 1423124 24426955 ~ 24427027 (+) True trnar-acg_2

Expression Profile