Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU201724 |
| length | 642 |
| lncRNA type | sense_over |
| GC content | 0.46 |
| exon number | 2 |
| gene id | G170484 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_047604.1 |
| NCBI id | CM018550.1 |
| chromosome length | 29376037 |
| location | 23006024 ~ 23019452 (+) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| id | name | namespace |
|---|---|---|
| GO:0003677 | DNA binding | molecular_function |
| GO:0097159 | organic cyclic compound binding | molecular_function |
| GO:1901363 | heterocyclic compound binding | molecular_function |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU201722 | lncRNA | upstream | 2193 | 23003595 ~ 23003831 (+) | True | G170482 |
| TU201509 | lncRNA | upstream | 14125 | 22985094 ~ 22991899 (+) | True | G170295 |
| TU201508 | lncRNA | upstream | 14125 | 22986696 ~ 22991899 (+) | False | G170295 |
| TU201560 | lncRNA | upstream | 21094 | 22984577 ~ 22984930 (+) | True | G170325 |
| TU201559 | lncRNA | upstream | 21663 | 22983947 ~ 22984361 (+) | True | G170324 |
| TU201828 | lncRNA | downstream | 129222 | 23148674 ~ 23149505 (+) | True | G170567 |
| TU201829 | lncRNA | downstream | 130090 | 23149542 ~ 23150084 (+) | True | G170568 |
| TU201871 | lncRNA | downstream | 355786 | 23375238 ~ 23375438 (+) | True | G170610 |
| TU202007 | lncRNA | downstream | 758817 | 23778269 ~ 23779227 (+) | True | G170717 |
| TU202006 | lncRNA | downstream | 759871 | 23779323 ~ 23782089 (+) | True | G170716 |
| XM_034307811.1 | mRNA | upstream | 23873 | 22879563 ~ 22982151 (+) | False | LOC113533992 |
| XM_034307804.1 | mRNA | upstream | 23876 | 22861807 ~ 22982148 (+) | False | LOC113533992 |
| XM_034307806.1 | mRNA | upstream | 23876 | 22861807 ~ 22982148 (+) | False | LOC113533992 |
| XM_034307808.1 | mRNA | upstream | 23876 | 22861807 ~ 22982148 (+) | False | LOC113533992 |
| XM_034307807.1 | mRNA | upstream | 23876 | 22861808 ~ 22982148 (+) | False | LOC113533992 |
| XM_026926270.2 | mRNA | downstream | 5204 | 23024656 ~ 23050841 (+) | False | mpp5a |
| XM_034307814.1 | mRNA | downstream | 5204 | 23024656 ~ 23050841 (+) | False | mpp5a |
| XM_026926267.2 | mRNA | downstream | 5205 | 23024657 ~ 23052674 (+) | True | mpp5a |
| XM_026926268.2 | mRNA | downstream | 5483 | 23024935 ~ 23050841 (+) | False | mpp5a |
| XM_026926269.2 | mRNA | downstream | 18581 | 23038033 ~ 23050841 (+) | False | mpp5a |
| TU201530 | other | upstream | 115254 | 22862027 ~ 22890770 (+) | True | LOC113533992 |
| TU200872 | other | upstream | 1185965 | 21819281 ~ 21820059 (+) | True | G169692 |
| TU200725 | other | upstream | 1331563 | 21669907 ~ 21674461 (+) | True | G169577 |
| XR_004578913.1 | other | upstream | 2474802 | 20528525 ~ 20531222 (+) | False | LOC113530103 |
| trnah-gug_10 | other | downstream | 942532 | 23961984 ~ 23962055 (+) | True | trnah-gug_10 |
| trnah-gug_11 | other | downstream | 945396 | 23964848 ~ 23964919 (+) | True | trnah-gug_11 |
| trnay-aua | other | downstream | 945582 | 23965034 ~ 23965106 (+) | True | trnay-aua |
| trnah-gug_12 | other | downstream | 1407317 | 24426769 ~ 24426840 (+) | True | trnah-gug_12 |
| trnar-acg_2 | other | downstream | 1407503 | 24426955 ~ 24427027 (+) | True | trnar-acg_2 |
