RNA id: TU202006


Basic Information

Item Value
RNA id TU202006
length 2492
lncRNA type inter_gene
GC content 0.38
exon number 2
gene id G170716
representative True

Chromosome Information

Item Value
chromosome id NC_047604.1
NCBI id CM018550.1
chromosome length 29376037
location 23779323 ~ 23782089 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

tCTTATTGCATCATTTAAATGCCTTCAACttaaatgtattatatacatatCACACAAAGtattaaagtgtttaataaGTGCAATGCAGAGCTCCATTTGTAACTACACCCATGTGCAAAAACCACTCAGGGAAATATGTTCTTCTCTCGCCCGATTATAGGTTTATATAGCGGACCATAAGAGCTTTGAATACGTAAGCCCTTTCTCACACTGACGTTTGCATTCCTACGTACAGACTGAATTTGGGAGGATGGCTTCCAAATGATTTGCAGCACAATAAACATTACAGGACTACGCAAGTGTTTCTATTACATTTAGTCTTGAAGgcgcattaggtaagatttgtgaAAAACAACTGTCTCTAATGGTTAAATGGGTGGAtttgagtaattttttttactcattgagCCCGCCTCTATTTCAATCCATTTACATacacgaagctccgcccctaaAATTTAGTGGTTCGACTCGAGTTaccattagcaaggactgtcatgacatcactttcaagcgcAATCGAACATTCAAAGCCATGTTACAACTCTACAAACATGAAACTTCTCCTCATAATGATTTGAGGATGTGAAGGgcgttgggggcgtgtctataaaatgacaataaatgcaaatgcaaatacaaattcCCAGCCTGGAAAGTGGGtttccaaactgtttttttttatttttttattttttagctgTGTTATATTCATTGTTCTGAGACAATGGCTTAAActattactatatacactacactatataaactattataggaaaaatattgactattCCACCTTTAaattatgctttttaaaaaaaaggttattttatTGAAGAGTTTTCCAAGAGGTCCCTGGTCTCAAAGAGTGCTCTCTGATTTATTTCTGATCATAGTGAAGTCTTTTCAGCTGTGGGAAATTAGCCTTCAGTCACGTCATATAACCAGCTTTTAATCACTTCACATGAAGACGCAGGAACGATTACAGGATACGTTAGACAGTATTTCTAAGTGTTGACGCCATTATAGTTTATTTGATAAAGGCTCTGTTTTAGAGAACAGGTGCAGAAATGTAAAGGACGATATGCATTATGATTAATAACAGAACTGCTTGAATCTAACATACGCTATTATTCTTTTACATGAACGTGTCAAGCTCACACAACCTGATATTTGGTCATAGTTACATTTGTTGGATTTAATTGAATTCTATTGAACTTCTTCATATAGAAAAAAACTACATATATTAGAAAAACTCAGTCAGGATTTGGATTCGAAAGGCTAACTAGCTTCAGTCTGCGTGATCAGGATGTGaaatgttagaattgtattGAACGAGGTTATTGTAGAAACCCCTGCATAATCCTGTGGACAAACTGAATACGTTATACGCTATAGTTCCGGCTGCTGAGCTGGGCATAATTCATTAGAGTGATGTTATTGCACAGGGCTTGATGGagcatcttttcttttttttttttttaaatcaatgtaaaaataacacaagaacatgacaaacatgcaaattaaaaaataatatcaaatacGCTTTTGCGAAATGACtgacaaaagaaatgaatcCTGAATTATTAACTAGCACCAGTAGATTTTTACTTTGAACTCCCACACCTCTgcaatggtttaaaaaaaaaaaaaaaaagacgatcACATTCAACGCCTGAAAGAGAAAAGGTGTGGAATAAAGACATGGCATGGCAAAATAAGTACATTTAtgacaaaactaaaaacaaatgttCTACAGCTACCAAGGAAGAGATGTGTAGAACTTGGAAGAATTCTTAAGAGACTGCAGTGAAACATGAATATATTCAGtccacacatgcacgcacacacacacacacataccccgaacacacacatacacacacaaatatttcatCCCTTCCATGACATGCATACACATCATCTACAGGCATAGACCTGgagacaaacaaaaattaaaggTGCTAGCTGCACCTGTAGCTAGGTTAAAAAGAGTGCTCAGAGAATAAATGGCATTACCACAGACAAATGCCACAGTGCCACCCAAGAAACCCCAAAGTGACTGACGTCTCCTGCCGTTCAGCACCTTCTAGTCCTTTGCAGAGCCCACGCAGCTTTGGAGAAGTCTCTTTGCTCACATTATGGAAAACGTCTTCCGGATCCTTTGCCTCTACTTCTTTAAAACCCCAAAATCCAGAAAAGAAAAGTGCTGGACCAGCTTCCACACAGCTGCAGCAACCTTCTGAGGAACGCAGTTCCAAAGATGAAACGGGAGTAGATAAAAGAAATGCAAACAACAATAAGTACCCTACAACTGCCCCAGGGGTCAAAGGGCAGTAAGGCCAAAGTTACAGCGGCAGTACATCATGCCACTGGAGTCCAACCAGCTGTCTGAGATGGGGTCATAGCGCTGCACTGTGTTCAGGTACGATGACCCTGAATGACCCCCCACCACATAGAGGCAGTTGTCCACGATGGCTGAGCCGACC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU202007 lncRNA upstream 96 23778269 ~ 23779227 (+) True G170717
TU201871 lncRNA upstream 403885 23375238 ~ 23375438 (+) True G170610
TU201829 lncRNA upstream 629239 23149542 ~ 23150084 (+) True G170568
TU201828 lncRNA upstream 629818 23148674 ~ 23149505 (+) True G170567
TU201724 lncRNA upstream 759871 23006024 ~ 23019452 (+) True G170484
TU202008 lncRNA downstream 44974 23827063 ~ 23829186 (+) True G170718
TU202239 lncRNA downstream 228260 24010349 ~ 24011349 (+) True G170893
XR_004578986.1 lncRNA downstream 246236 24028325 ~ 24034062 (+) True LOC117598313
TU202251 lncRNA downstream 253695 24035784 ~ 24036171 (+) True G170904
TU202374 lncRNA downstream 525765 24307854 ~ 24308329 (+) True G171017
XM_026926912.2 mRNA upstream 2007 23768992 ~ 23777316 (+) True c10h14orf28
XM_034308039.1 mRNA upstream 59356 23510201 ~ 23719967 (+) True ush2a
XM_026926844.2 mRNA upstream 283939 23428304 ~ 23495384 (+) False esrrga
XM_026926805.2 mRNA downstream 15453 23797542 ~ 23820314 (+) True LOC113534170
XM_034308066.1 mRNA downstream 38757 23820846 ~ 23864133 (+) True fancm
XM_034308067.1 mRNA downstream 38757 23820846 ~ 23864133 (+) False fancm
XM_026926864.2 mRNA downstream 97220 23879309 ~ 23883722 (+) True slc25a47b
XM_026926068.2 mRNA downstream 112759 23894848 ~ 23909635 (+) True wdr25
XR_004578924.1 other upstream 756928 22861807 ~ 23022395 (+) False LOC113533992
XR_004578925.1 other upstream 756928 22861810 ~ 23022395 (+) False LOC113533992
TU201530 other upstream 888553 22862027 ~ 22890770 (+) True LOC113533992
TU200872 other upstream 1959264 21819281 ~ 21820059 (+) True G169692
TU200725 other upstream 2104862 21669907 ~ 21674461 (+) True G169577
trnah-gug_10 other downstream 179895 23961984 ~ 23962055 (+) True trnah-gug_10
trnah-gug_11 other downstream 182759 23964848 ~ 23964919 (+) True trnah-gug_11
trnay-aua other downstream 182945 23965034 ~ 23965106 (+) True trnay-aua
trnah-gug_12 other downstream 644680 24426769 ~ 24426840 (+) True trnah-gug_12
trnar-acg_2 other downstream 644866 24426955 ~ 24427027 (+) True trnar-acg_2

Expression Profile