RNA id: TU202008


Basic Information

Item Value
RNA id TU202008
length 2079
lncRNA type intronic
GC content 0.36
exon number 2
gene id G170718
representative True

Chromosome Information

Item Value
chromosome id NC_047604.1
NCBI id CM018550.1
chromosome length 29376037
location 23827063 ~ 23829186 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

tctttatttagacagaagaacaaaaaacaagaaacgCACAGAAGTGTTTGTTTGCAATTCACAGACTTTAGAGCAAGCATTTacaaaagagtgaaaaagagcAGAAAGATAAAGTTAAAGATAGATGATCTCAGAGTGTTACAGTATATCTATAATGCAGAAATATTTGACATTTTACCAGTATTTAACTGCTCAAATATCTGTTCACATTATACTTTGATTGTATTGTTGTACTATAAGGCATTAAAACAGAGTTTAGAAGTAACTTCTAAACACAAATGCAGCTAggaacataaaatatatattaatataaataaaacattcaacaaaAATAGTACTACTATTTTATATCACTGTGACCCTTAAAAATATACACTTCCCTAATTATCACTAGCATGAGTGTATGAAGGTGAGAGTGGTCAATTTCACACAGaaggatagaaaaaaaaaaaagacatgatttATAAGGTAGATCATCATACATATTGCTAGTGATGTTTTTGGTTTACAGTATTGTTTCTTGCTAagttaattcttttttttcctgcaaaagTACATTCTTGCTCTGAATTAAGAATAAGCTACTACTGTAGCTCAGTGATTAATGGCCATTTATTAGTCATGCATAAGGGGAAAATTTTGCCTCCACATCATTCACTTTTAAAGCCCCAACACAACTGCCACCGAAGCATTCTTCTTGTATTAACTTTTTAGGGCAATTCCTGTAGGACTTGTGCTGTGAGCAATGTCACAGTTATTGAGAATAATCGATCACGcgccttttTTAAGCTAAGCCCATTTTAATTATACAGCACGAACAAGGCTTCCTTGAAACTCTTCTTCTACTTCGCTACTTTGCTACAGAAGATTCATTTCCTCTAGCTTTCTAAAGAAAACCAGTAATAAACATGGAGAAAACATACATAGACAAGACTGCAGCATGTGTaagtacttatttttttttaagtgatgaGCAAGAACCGAGTAGGAATTGGGTTCTATGATgctaatacaatttttttttttttaagctcagtaaaaaagaaataacattgGTTTTATTGAGGAACAAAAGCTACAGAAATTACAGTCAACAGATATCCAGTCAGAAAATGTTATTCATGTTTCCACAACATAAAGCTGACCTGCCAGCTTTTACATATCATTCTGCGTAAAGGAACATCACATTGGAGTAGTCTTCCCACCCCCTTCCCctcatctcacattagtaatttCTCATCTCCCCTAGTGTTTCCCCCCGCTTTCTTTCAGTTACAGTACTTGGAGAATGTTTTGCGTTCATTAAcgtgaaataaaaatctgtgtatGTTTGATTTCGCAACAATTTACAtcaaaaagtgcagtttttccaaaaaaaaaaaaaaaaattaattaaaacagaacaaataggcctgcaaaaatatatacaatctAACAtgttacaaataattttaatctcATTCAAGTGATTTGTCAAAGTACtataatgattgtgtttttAACCTACCACCCATCCATCTCCTTCAGCTATGCATTGTTCCTCTTCATGCTTGGCAGGTCTGACAAAGCCTGGTGCAGGACATCCTTTTCACTGTCTCAAACCCTGTTTTCTGTTGATCTGTTCCTCATGTAACGCAGGACAGTGTGCTTGTTGCTGTAGATTGGGGCAACTAAGCAGGTGCAGGGACAGGTGTTTCCAGGGGAAACCCTTCACTGCCTCTGAATGAACCATATCTCATTAACACGGTGTGCAGCTGCGGGGTTGGTGTAGCCAGCTATGATGAAGGAGTCAGTGACATACAGCCCGGGAGAATCCAGCATTTCTGCCAGAGTGTTGCTCTGACTCATGAGGGTAGTCTCGTTTGTAGCACCCGTGAAGGCCCTGGGACACGGAAAGCACCATGAATTGCTAATTGGCACAAAGATACTTAACAGAGGGGTTAGATATATTTACATGCACACCTGTCACTGGAAATAGCTATAGACTATATACTTGGTCAACAATGGCATCTCCTCAAAGTGAATATTATGCTTTAAACATCTGGGAGTTTTGAATTTGAACTGTTTCACCTCCTATGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU202006 lncRNA upstream 44974 23779323 ~ 23782089 (+) True G170716
TU202007 lncRNA upstream 47836 23778269 ~ 23779227 (+) True G170717
TU201871 lncRNA upstream 451625 23375238 ~ 23375438 (+) True G170610
TU201829 lncRNA upstream 676979 23149542 ~ 23150084 (+) True G170568
TU201828 lncRNA upstream 677558 23148674 ~ 23149505 (+) True G170567
TU202239 lncRNA downstream 181163 24010349 ~ 24011349 (+) True G170893
XR_004578986.1 lncRNA downstream 199139 24028325 ~ 24034062 (+) True LOC117598313
TU202251 lncRNA downstream 206598 24035784 ~ 24036171 (+) True G170904
TU202374 lncRNA downstream 478668 24307854 ~ 24308329 (+) True G171017
TU202376 lncRNA downstream 480444 24309630 ~ 24309966 (+) True G171019
XM_026926805.2 mRNA upstream 6749 23797542 ~ 23820314 (+) True LOC113534170
XM_026926912.2 mRNA upstream 49747 23768992 ~ 23777316 (+) True c10h14orf28
XM_034308039.1 mRNA upstream 107096 23510201 ~ 23719967 (+) True ush2a
XM_026926844.2 mRNA upstream 331679 23428304 ~ 23495384 (+) False esrrga
XM_026926864.2 mRNA downstream 50123 23879309 ~ 23883722 (+) True slc25a47b
XM_026926068.2 mRNA downstream 65662 23894848 ~ 23909635 (+) True wdr25
XM_026926208.2 mRNA downstream 150204 23979390 ~ 23982635 (+) True LOC113533835
XM_026926430.2 mRNA downstream 159572 23988758 ~ 23998042 (+) True ctsba
XM_026926612.2 mRNA downstream 404172 24233358 ~ 24235125 (+) True pomca
XR_004578924.1 other upstream 804668 22861807 ~ 23022395 (+) False LOC113533992
XR_004578925.1 other upstream 804668 22861810 ~ 23022395 (+) False LOC113533992
TU201530 other upstream 936293 22862027 ~ 22890770 (+) True LOC113533992
TU200872 other upstream 2007004 21819281 ~ 21820059 (+) True G169692
TU200725 other upstream 2152602 21669907 ~ 21674461 (+) True G169577
trnah-gug_10 other downstream 132798 23961984 ~ 23962055 (+) True trnah-gug_10
trnah-gug_11 other downstream 135662 23964848 ~ 23964919 (+) True trnah-gug_11
trnay-aua other downstream 135848 23965034 ~ 23965106 (+) True trnay-aua
trnah-gug_12 other downstream 597583 24426769 ~ 24426840 (+) True trnah-gug_12
trnar-acg_2 other downstream 597769 24426955 ~ 24427027 (+) True trnar-acg_2

Expression Profile