RNA id: TU202233


Basic Information

Item Value
RNA id TU202233
length 1752
lncRNA type inter_gene
GC content 0.37
exon number 2
gene id G170887
representative True

Chromosome Information

Item Value
chromosome id NC_047604.1
NCBI id CM018550.1
chromosome length 29376037
location 23995566 ~ 23998711 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ttatttatttattttgcataaaatacATAGGATAATATACATTGGACTGGAACTGCTAGTGTAGTTATTGTACCTGAAGCTACATGATCTTACTGCACTGCCACATACAAATTTATATAAGGATATACAAATTTATCAAAGGAAATTTTTCAAGGATAGTTCTTCATTCCCTCTATTTCctccctttttttaaattccccAAATAACAGTACTTAAGAGGCCAAAAAGATATGTCATTATCACTTGTGCAGCCATTAAATTAGCTAGTAATATTATTCAAAATGATCTTAAGCTGCATAACCATTAACATACTGGTAGATTTTTGCAGGAAGTTGTGTTCTTTCACAGATATAAAACAAACTGGATACATAAAACTATCACGTCACAATTTGTTTAAGAAACACAggatgtgatattttatttgaaacttCTGCAGAATCacttattaaaaagaaatacatggttataaaatcaaaacaatgcCCATTTATTAAtccaaaacagaaagaaaaaaaatcaccataaaCTGCAAActgaaaaatctaaaaaaattttaaaaagtaatcttgaagaaatgataaaatgctccaatttaaaaaagaactgtaaaataatttttagttCTAACATGCCATATTTGAATGTCCTGaattcagattttcatttttcaacttCTTTTCCACCTGTATAGGAACTACTTAGGGATACCAGCCACAATCTCAGACTCTATGCCACAGTGGTCCACACCTCTCAGGATCTTGAATTACCATTATCACCCCAATCGGTGTTCCACGAGTTGGCAGCCAGCCAGTAAGGGGTTCCATTTTCCTCTCCCCAGCCTAGGATCTTGATAGCATGACCTCCTAGTACACCACCAGTAATGTGCTTATAAACACCTAGAATTTGGAACagaaagaacaccataccttgAAGAGCTTATGTGTGTGACTTCTTACTATACAAACAGTAAATCAGTGCTGATATCAGCTTCTAAAATCAACAGATGAAGTTGAACTAAAGGCTGCTCATGTTCCCAGGATTTATCACTACTTCACTGAATTGTATATTCTAACCAATATACAATTCCAAACCACTTGACCAAGCTTCTAGCTTCAGACAATCAAAtaatttattcacacacacacaatttatttcAGATGGGATTCATGCCTCACCAGACTTGTACAAAAGAAAGTCCTCATATACAGTGAAAGCTCCCTCCACTGGGCCATTACTGTAGAGCTCTTGCATTATCTGCTTCTCATCAGAAGCAACTCTGTAGGCTTGTTTTCCTGCAACAATAAAAGGCCCATAATCTGCCTCAATATTCACAAAGCAATGTGGAATGTTGTCAAAGGCGAAATTAACTACAATCAAGTATTTGGCTATGTTAAAGGACCTTAGCTTGTATGCAGTTCACACTGGCAAACAGGTCTATTGATGTAGGTACTTACCAAAGTGCTTGTCCTGCATGTAAGAGAGACTGTAGCCAGGTTCACATTTTTCCTCGCAGTTTGGAGTGTCTCCACCCTCCCCTGTGCAAGGAGGGCGACTGCCATTTATGTGGTGCTCACAGGGCTCAATAGTGTATGGTCGACAGCCTAAAGAACACAAAAGATCCATTTAACAAAATGCCACTAAAATTTTAACCATGTGGAAGAGTATGCGCTTACCTATATGAGAGTTATACAGTCCACCTGTCACTAGACCTTGATTAGTCCAGAATTCCCAAGCAGCAGAAGGGTACCCACC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU202202 lncRNA downstream 76543 23918425 ~ 23919023 (-) True G170866
TU202188 lncRNA downstream 101211 23894124 ~ 23894355 (-) True G170852
TU202111 lncRNA downstream 216332 23777979 ~ 23779234 (-) True G170788
TU202110 lncRNA downstream 216332 23778269 ~ 23779234 (-) False G170788
TU202129 lncRNA downstream 218255 23776555 ~ 23777311 (-) True G170805
TU202284 lncRNA upstream 35797 24034508 ~ 24034898 (-) True G170936
TU202385 lncRNA upstream 248974 24247685 ~ 24248015 (-) True G171028
TU202417 lncRNA upstream 285298 24284009 ~ 24284401 (-) True G171056
TU202554 lncRNA upstream 420220 24418931 ~ 24494790 (-) True G171160
TU202581 lncRNA upstream 469512 24468223 ~ 24469486 (-) True G171175
XM_026925971.2 mRNA downstream 44530 23919138 ~ 23951036 (-) False LOC113533700
XM_026925973.2 mRNA downstream 44587 23919138 ~ 23950979 (-) False LOC113533700
XM_026925970.2 mRNA downstream 44587 23919138 ~ 23950979 (-) True LOC113533700
XM_026926862.2 mRNA downstream 102927 23884755 ~ 23892639 (-) True wars1
XM_034308277.1 mRNA downstream 120345 23869091 ~ 23875221 (-) False LOC113534026
XM_026926229.2 mRNA upstream 4754 24003465 ~ 24028482 (-) True smyd2a
XM_034308235.1 mRNA upstream 42034 24040745 ~ 24078739 (-) False prox1a
XM_034308234.1 mRNA upstream 42034 24040745 ~ 24078739 (-) False prox1a
XM_034308233.1 mRNA upstream 44906 24043617 ~ 24078739 (-) True prox1a
XM_034308286.1 mRNA upstream 288131 24286842 ~ 24291965 (-) True LOC117598332
TU201673 other downstream 1131799 22855494 ~ 22863767 (-) True G170435
TU201211 other downstream 1879690 22115565 ~ 22115876 (-) True G170023
TU200304 other downstream 3178350 20814561 ~ 20817216 (-) False grem1b
XR_003403127.1 other downstream 3262514 20732930 ~ 20733052 (-) True LOC113530231
TU200198 other downstream 3429767 20564929 ~ 20565799 (-) True G169119
TU202681 other upstream 802372 24801083 ~ 24807095 (-) False G171256
TU203072 other upstream 1260128 25258839 ~ 25259209 (-) False G171569
TU203074 other upstream 1260128 25258839 ~ 25259362 (-) True G171569
TU203284 other upstream 1580228 25578939 ~ 25582527 (-) True G171734
TU204658 other upstream 3900780 27899491 ~ 27910890 (-) True si:ch73-204p21.2

Expression Profile