RNA id: TU202554


Basic Information

Item Value
RNA id TU202554
length 1135
lncRNA type read_through
GC content 0.38
exon number 2
gene id G171160
representative True

Chromosome Information

Item Value
chromosome id NC_047604.1
NCBI id CM018550.1
chromosome length 29376037
location 24418931 ~ 24494790 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

aaatcattacagtatgcAGTTCTATAAAAGTTAAGACATGATCAAGTGCAATGAAATGATGTTCAATGTGAGAATATTGTGAATTAGAGTCCTGTGATGAGCACAGGACAATCTTTACATTTCTACCTAAGAGCTGTTGCTATAATcatacagtatccaggtgagattatctacTGAAGAAAGGGTGAGACCTGGGAAATGCAGGTCTCTATCATATACATGCGAGGCTATTCCGAAACCTCCAGATGAAGAAGCAGGAGAACCCGAGCAGGCTGTGTatggctgctgtgtgtgttagtcacCACTATTACACCAATACTGGGTGCTATATTTGAGTGCATGGGTTTCTTCCTGCTGAGCTCAAATCAGTTTCACCACTCAGGAATCTGATTTACTCTCAGTAATGTTTCCCTGTATGTAAGAGGTTGGGTTGTCTGGAAAAGTCATTTCCGCTCCTTTTGGAACAAAGACTAGACTTGGAGAATGCCAGTGCCATCTGTTTTAAAAACCAGAATGACAAAGGAAGTAGCGGTAGTGATGAATTGTGGTATGTATGGTTGTGGCTATTGAAAAAACTTTGCACTCAGCTCATTTTGGCAATTGGTTTGTTCATTTGAGAACATGTCTATTTGAACAAGAATACGGCATGTAGTATTTGCCAAGTAACTTAATGTTTTAGGATGTTAAAACCATTTAAGTGTATGCTATTATTTCTGTCATTGTGGTTggcttttaatattaatttacattGTATGGGTGAATGCGGCAAATTAGTTTGCCACCAGTTAGGAAGAGtatgaaacattagggttttttttttttttttttttttttaaacgttacATTTACTGATTTCAAGTCCATCAATTTTGGTTCActtgctctctcactcttttcaaGAAGAGAGGAGTCTGGTCTTGTATGACTGAAAATAACTGCCCAGGAGCAATGCCAAGATGGCCACCAAGTGGACAGACTTTACAAGAAAGACTGTACATTTGTTGTTCCATCACTAGTTTCTTTGAATGCCCCAATACACTAATGGCTGCGTATAGACAACAGAAAGCCAGAGATTTGAGACACTGAGCTAAAATTCTGGTCTAGACTATTTACTCTTccagctgccttttttttt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU202417 lncRNA downstream 134530 24284009 ~ 24284401 (-) True G171056
TU202385 lncRNA downstream 170916 24247685 ~ 24248015 (-) True G171028
TU202284 lncRNA downstream 384033 24034508 ~ 24034898 (-) True G170936
TU202233 lncRNA downstream 420220 23995566 ~ 23998711 (-) True G170887
TU202202 lncRNA downstream 499908 23918425 ~ 23919023 (-) True G170866
TU202589 lncRNA upstream 20119 24514909 ~ 24543974 (-) False luzp1
TU202594 lncRNA upstream 33537 24528327 ~ 24528696 (-) True G171184
TU202651 lncRNA upstream 103485 24598275 ~ 24655253 (-) True G171232
TU202688 lncRNA upstream 272120 24766910 ~ 24801063 (-) True G171258
TU202677 lncRNA upstream 286492 24781282 ~ 24868017 (-) True G171256
XM_026926577.2 mRNA downstream 10149 24403823 ~ 24408782 (-) True dnal1
XM_034307756.1 mRNA downstream 17372 24391053 ~ 24401559 (-) False tedc1
XM_026925988.2 mRNA downstream 17373 24391053 ~ 24401558 (-) False tedc1
XM_034307755.1 mRNA downstream 17373 24391053 ~ 24401558 (-) True tedc1
XM_026926645.2 mRNA downstream 38825 24364002 ~ 24380106 (-) True tmem121aa
XM_026926062.2 mRNA upstream 479249 24974039 ~ 24991828 (-) True cep295
XM_026926064.2 mRNA upstream 479249 24974039 ~ 24991827 (-) False cep295
XM_026926447.2 mRNA upstream 514993 25009783 ~ 25046786 (-) True si:ch211-266o15.1
XM_034307977.1 mRNA upstream 561574 25056364 ~ 25106759 (-) False nid2a
XM_034307978.1 mRNA upstream 561574 25056364 ~ 25106759 (-) False nid2a
TU201673 other downstream 1555164 22855494 ~ 22863767 (-) True G170435
TU201211 other downstream 2303055 22115565 ~ 22115876 (-) True G170023
TU200304 other downstream 3601715 20814561 ~ 20817216 (-) False grem1b
XR_003403127.1 other downstream 3685879 20732930 ~ 20733052 (-) True LOC113530231
TU200198 other downstream 3853132 20564929 ~ 20565799 (-) True G169119
TU202681 other upstream 306293 24801083 ~ 24807095 (-) False G171256
TU203072 other upstream 764049 25258839 ~ 25259209 (-) False G171569
TU203074 other upstream 764049 25258839 ~ 25259362 (-) True G171569
TU203284 other upstream 1084149 25578939 ~ 25582527 (-) True G171734
TU204658 other upstream 3404701 27899491 ~ 27910890 (-) True si:ch73-204p21.2

Expression Profile