RNA id: TU202688


Basic Information

Item Value
RNA id TU202688
length 4562
lncRNA type inter_gene
GC content 0.42
exon number 3
gene id G171258
representative True

Chromosome Information

Item Value
chromosome id NC_047604.1
NCBI id CM018550.1
chromosome length 29376037
location 24766910 ~ 24801063 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

aatcagagagagagagagagagagagagagagagagagagaatgttaaaGTGTCTTCTCTACTGACTGCAATACCTGGAACGACATGCACATCGATATTTATCACTAACGTGATCTTCAATCGTGcctaagatttattttataattcaattCTTAAATTCTAAGTTTTTACCCACCATGCCGTTCAACTACCTGCTCATAATGGCGCCAGTGGGAATTCTTCTGTATCTAAActgagcgatgcagcggcgctttagtgctttagtctgtccagctgttTGTacgctctgctcaaacagatcagcttccaaagcttctaCTTTCACACTAATACCTCTGACAAAACCACCACATCACCATCGTCATCTTGCAGATCGCTAGCTAGCCGAGTTTCTTCTTTGAGTCCATGTTTGCACTACATCGATGTGGGATTTCTGGTAACGTGACTAACGTTAACGTCGCTGGAAAATGGCGGATGAGAAAAGAGCCAACAGCAAAAAATCTATATAACAGTTAGCCCTTATCACTCAGACAGCTGATCTTATCTGCTCTGGGAGTCTTGCTTTAATCTCGGTTTATGATGTTGCTACCTGTTTTACAATagactgagagagtgagagagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtggtggaaagGACTGACAGTCCTTCTTAGCACACAGTGAACACAATCACATTCACTCAACTGTGTCACACACAGCAGGACATAACTCCAGCCATTTGTGGTTCAGCGTGCCAGCAGAGTCGCacaatcgtgtgtgtgtgtgtgtgtgtttggaggctAAAACAAGAGCCTCCATTATGTGAAAACAGGCAGGAACTgaccctctctctcgctctctcctgCCTGCAGGGTGACTTCATTCAGTAAACACACCATTTGTCTTTCCAttgtctctctccatcatgCCATCACCCTCCATACCcgtctctgcgtgtgtgtgcctgtctctctttctctctctctatcgctcCATCAGCCCTGTGTTCGTCTCTCTCCTCCATCAACCCGCCAATCATCCTTCGCCATGCACATAATCAGGCGATTCGGTCCGGCGCAGACGCGGCGGCACGTTCATCTCTGAGTCATGCTCGTTTTCTATACCGCTGTATTTCTACCTGAAATACGACAATTAAAACCCAAGCTCGTGTTCGTACCTTGCTAAATCAAACACGATAGCGTTTTTACCCAGACTGggtacgagtgtgtgtttttgttactcgtcaatactgatactgaattgagtaacctacttagtattgATCAATCAGGGGAGCCATTTTATTTGGCTCTGTTTATGTCTGCGTggaaaatttataaattaaggACTCACGTATTACTCCAAGTACTTGTGCCTGTAATCTGGGCTCTTTTGGAGGTGGGGCTTATAACTGCAGATTTGCTTCTGCATACAGGTATTCCTTCTAAACAATTTCATACAGCACACAGATTTACAAAATGGTAAGCACtatgttccttttttttcctgtggtaTCAATACTTTTTGGACGTATGGCATGTCATCGTGTAGGAATACCTACAAACAGTGAGCTGTTCTCAGTACAAGCTCTCGCACCACAAAGGTGAGCTAATTGCAGCGCTCCAAATCCTATAACTCTTTCCCTTCGTGAaagcagaaacaggaagtaaggtGACAAGTTGAACCAATCACGTTACTTGGAATGCTGTGCCGTGGGCGAATGCGGAACACACCACGGCTCGGTTAAATTAGATCCCGGATCGCTGGTTTTTACGAGGACCAGGGATCAGTTCTCCGGTCAGCTATCACCAGAAAAGTTAAAGATTCTTCTAGTGAGTAGTTAGTTTTTGTAAGTGGGTCATTGTGTAGATATTTGGCTGACAAACACAGCATAAAGCAAGACATGAAAACgtctcccaacacacacacacacacatacacatacacatacacatacacacacatacatacatacatacacacttaaGGCTGCTATTAGATCAAGAATGTTCTGGAGCTTGCCCTGTTCCTTTGCTCAACATTCCAGTGCCAAGTAGGAACGCAAGTCGTAGAGGAGTGTGTACAAGTgtcaacacacatacacacacttatctcCTACTGTCAAATTAGTCTGAAGATCTACCACCACTACATTCCTGCATCCTGCTGATTTCtctcagcaacacacacacagagcgagcAGTGAGAGGTTTCGCAAGTTTCGCAGCGTTATTGTTTGGAAGTGACGTTTTCGCTCTGCTCGACTACCGGCTCGTGCATGTTTAATGTTCAGTGTGGCTGCTTCTTCTGGATCGGTGTGAGCGAAGGTTAATGCCTGACTGAGCTCTGAGAGCACACAACACGCAAACGTCGCACCCGTACGTCACGACCCGGCTGCAAAAAGCTAAGACCGCTGCAAGAACGCTCGTTTGTTAACAAAACCTGCAATCAAAGCGAAACAATCGGAGTAAAGGAAGTGGTCTGATAagcctgtttatagctgatataaagTGTGAGAAACGATCCTGGCTGTAAACAACTGATTTATTGCGGCAGTAAATTCAAGCTGATGCTTGAACGTAGAGCTGTAACAGTTACGCCGATTACAAAAAGTTATCGATGTGGGTTTATATATTTGACACATCGTTTACTTAACCAACaacataaatgtgttataatgtaAAACAGCACTGGGCTCTACTCCTGGTTAGAGCGTAATAAAAGAGTGACGACATTACAGGAAGAAGCAGCACTGTTACTAATGCACCACATAACAGCGTGCGCAAAACTGTTCAAGcctaatgctgccttcaagtctGCCTCGGAAATTCGTACGTGCGAGTTCAGCGAAGGTACACATGACGTGGCATTGGCTGGAAAACaaaaaggaggggaaaaaaaaaaaaaaaaaacaggcgacatgagaaaactttttttataattaattatttttatcagGGACAAGAAGCTTTGAAGAATTTTGCctttctgaaagaaaataaagaactgaacGATTAACATATGAACTTGTAGAAGAATACGATTTAAAAGAGGGCGGAGTCAAAAGGGCCAAAAGTGCCACCTTGGTGAGCGAAATATGTAAAACAATTAAAGTTATAGCATCGTATTACATTTCATGAAAGGAGCTTGATATTTTTTCGGTGTAGTCTTAGTTTAATGAGTTACTCCTGTTTAATTTTGGAGGTTTAAGATTAACGATGAAGCAATGGCTGCGAGATTTAGTACCGTTTTTATACACAAGACATAGGGAAAGGGAAACAATTAACTCCGTAaacttttatttgaaataaattccTTATCAAATTCCGTATTTGTAATTCAAAATGCTTATTGTTGTTACAGGATATAATTATTAGATTAGTCCTACAGGTAAAATTCTGTAGCATAACgcaatgttaaatgttaagttGTTCCTCAGAATTTTGTTATACGTTACTGAACGAACACAAACGCCGTTCTCAGTTCACAAGCCAAATTTAAGAGAATTAATCAGCATCAATAATCAGCTAGTATAATATTTGTTTCTTGCAGCCATACTTCCAGGACACAAACGCACACTAAACTCAAAAGTACTTCAGGTCTAACATATTGTACATAAGCACTTCTGAATGATTTTATCATAATGATTAATCTCTGCACTACTCTGATATCAGCACATAACGCTGTTTTCATACTGCAGCAGCAGAATCAAATACGCCAACACTTCGGGTGCGATCACATGCTCATGTTAAATTGTGTGCCACTTTGCAACAACAAAGCTACTTGAATAAGACAGCCCCTTGTGGCGCCTTTGAGGGGCAAGCGAAAATCTCAAACTTAACACATACGTGGaaagaaagatgtttttttctctctctctcactcacacacacacacacacactactgaaaagagaaaagaaacgGAGCCACAGCTGAGGGCCTGAGAGGGGCAACGAGATATGTGAGGCAGTTGTGGAATGTAGATGGGTGAGGCCTGCCCTCAGGTTCCTGCAGCATGTGTGTAGGGGTGTGCTTTTATATCTTGGGAGaaaaaatgtccccacaaggataggaatatctccCAGTTTTGACCTGGTCCCCacaaggcatttttttttgctttttttttttagtaaaaaataataataaaagaactgtttccttttgtttatcAGGCTTTTGTTAATCAGGCTAAGCTTAGGGTTCGATTTAGGTGCAGCACAATACTAATTcacagcattaataattatggaaggtcctcacatgGATAGTAAAACaaccgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgttagttgaATAGACAGGACTCATAAGTGGGCACCATGTATTTGATGTTGATGAAGGCATCCTCTCCTCCGTAGCGCTCAAACACCTCCAGCGTCTCTTGAATAAGATCGCCGATGTTCTCCCGCTTCTGCTGGCTATAATCAATGCCATCTCCACTGTTTGCTGcaaaatagacacacacacacacgcacacacacacacacacacacacat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU202651 lncRNA downstream 111657 24598275 ~ 24655253 (-) True G171232
TU202589 lncRNA downstream 222936 24514909 ~ 24543974 (-) False luzp1
TU202594 lncRNA downstream 238214 24528327 ~ 24528696 (-) True G171184
TU202554 lncRNA downstream 272120 24418931 ~ 24494790 (-) True G171160
TU202581 lncRNA downstream 297424 24468223 ~ 24469486 (-) True G171175
TU202690 lncRNA upstream 12115 24813178 ~ 24822221 (-) True G171260
TU202679 lncRNA upstream 26578 24827641 ~ 24902040 (-) False G171256
TU202686 lncRNA upstream 29869 24830932 ~ 24842190 (-) True G171257
TU202675 lncRNA upstream 55828 24856891 ~ 24868017 (-) False G171256
TU202682 lncRNA upstream 55828 24856891 ~ 24926224 (-) False G171256
XM_034308381.1 mRNA downstream 222831 24490238 ~ 24544079 (-) False luzp1
XM_034308380.1 mRNA downstream 222831 24490238 ~ 24544079 (-) False luzp1
XM_034308379.1 mRNA downstream 222831 24490238 ~ 24544079 (-) True luzp1
XM_034308382.1 mRNA downstream 229075 24490238 ~ 24537835 (-) False luzp1
XM_026926874.2 mRNA downstream 303974 24454401 ~ 24462936 (-) True tmem30b
XM_026926062.2 mRNA upstream 172976 24974039 ~ 24991828 (-) True cep295
XM_026926064.2 mRNA upstream 172976 24974039 ~ 24991827 (-) False cep295
XM_026926447.2 mRNA upstream 208720 25009783 ~ 25046786 (-) True si:ch211-266o15.1
XM_034307977.1 mRNA upstream 255301 25056364 ~ 25106759 (-) False nid2a
XM_034307978.1 mRNA upstream 255301 25056364 ~ 25106759 (-) False nid2a
TU201673 other downstream 1903143 22855494 ~ 22863767 (-) True G170435
TU201211 other downstream 2651034 22115565 ~ 22115876 (-) True G170023
TU200304 other downstream 3949694 20814561 ~ 20817216 (-) False grem1b
XR_003403127.1 other downstream 4033858 20732930 ~ 20733052 (-) True LOC113530231
TU200198 other downstream 4201111 20564929 ~ 20565799 (-) True G169119
TU202681 other upstream 20 24801083 ~ 24807095 (-) False G171256
TU203072 other upstream 457776 25258839 ~ 25259209 (-) False G171569
TU203074 other upstream 457776 25258839 ~ 25259362 (-) True G171569
TU203284 other upstream 777876 25578939 ~ 25582527 (-) True G171734
TU204658 other upstream 3098428 27899491 ~ 27910890 (-) True si:ch73-204p21.2

Expression Profile