RNA id: TU202690


Basic Information

Item Value
RNA id TU202690
length 5130
lncRNA type inter_gene
GC content 0.43
exon number 3
gene id G171260
representative True

Chromosome Information

Item Value
chromosome id NC_047604.1
NCBI id CM018550.1
chromosome length 29376037
location 24813178 ~ 24822221 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

gcaaaacagagacagacacacagacaaacacacacacagagagagagagagagagatacacagagacagacagagactgggatacagacagacacaagcTGACCAGATTCAGTTTCATCAAAATGGAAATAACGGTTTAAATATTTCCACGTTTTCATCCCAATGACAAACCCCCGTCCTGCTCTATCATCTTCAATGCaaatgatctgtgtgtgtttgtgtgtgtgtgtgtgtgtgtgtgtggtgacgtTGATTGGACATGACAGAGAGCAGGGCTCTGATGCACTGGGGGAAATTGCTCACTTTGAATCCTGGAACCAGGCAGTAATTACAGCCAGAAGGGGACGCCAACACTTATACACAAAAATTCatcagaaagaaggaaagaagacaGACAAGGAGGACAAGAATGTGAGCAACATGACAATTTTCTGTGTAAAACCATCATCTGCTTCATGAACGCTACTTTATGCTAACAGCAGCTAATGCTATATAAACGTTATAGCGGTCATCTTAAGCTTGTGAACAAACCAGGATGTAGATTTTCAATTTGAAATAATGAGCTCTACCATCCTCCCAGGTTCTCCGCCATGTACGGGATAAGACCAGGGTGTACAGGCAGCCATGACTGTGAGGGGCAGCATCAGAATGAGTAGTCCAGAAAGCAGCTAATGCTGCATTAGACTAAAACTCATAAAATGGAATTTCAGACCACAGagtagaaaaacaaaacagaaaaaaaaaaaaaaaaatgcaccctCAACTTGGAAAGTCGGGATGGACTCCTCAAcccagagttcagcaagtgacggcaaatcaacatggctgattgtagcatcaacagtaaacaaagtagcacttctttacttttaaataagtGCTACTGTACATAACATTGAGGCGTACATGGCTCTTTCTATGACTTTGCAActcaaaaatgatgtaattccgTCCACCCACTTCCGAGGTAAGTCAAACATATGTTTGTGAGAATGTGAACATAGTGTGCATCTGGGAAAATTACACCCCTGTCAACAGACAGCTGCATCGAACACACAAACATGGGTCAgcccagaacacacacacaaatatgcttAAAAAACCAGTAGGGCTATACTTTCAGGCACTTAACTCCAAGCTGTCCCCTTCCAGAAGCATCAGAAGCAGTTTAGAATCCACTCAGTACAGAGCCACATTTGTCCTGCGATACAGGAAAGACTTTGGAGCCGGTTTAGCATGTGGACaacattcactcatttatttctctGAAAGCATGAGTCAATATGTCCGTTTAAGCCAAAGCAGTGCGCCTGAGTAAACAAGACTGATTTCGAAAacagtaatgcgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcgtgtgcgtgtgcgcgtgtgtgtgcatattcCCCCTCTGAGGGCTCGCTGTGAGGAAGGGCAGCCTCTGAGTGACACCGCAGGGATGCACAACAACACGAGGCTAAagagcagagcagagagagCTGCACGCTCAGAGCTCATGGCTAAACATCGGACAAAGATCAATGACCGGCTACACCCCTTAATGCATCCCAGTCCATGCCCTCTTCTTCCCAAACACTTAAAATCCCTACTTCCATTGCAAATTGGTCTCAGGAAtatgacagacagacatgcacacactaaACTCATTAGGGAGTCAGAGAACAGAGCAGGTGGGATGGAGGTCCAACATTCAGTCTCATTTGCAGATGAccaaaggtcaaaggttaaCACCCTACCACTACTAAACCACATGGACAAATATGTTCCTCTGCCTGGGTACTTGTCCTGCTTAACTTGAGACACCCCACCGAGCTCAACACTTGCAGAACCATCGCCTCAAATGGACAGGCTATTTTAAAGTTGTAGTTTAGCTAAGCAGAAACTGTCTGCTGCACTACAGTGCAGCCTTTGTATGTGGGATGATTTTTACTCACTGTATTAAATAGTGTGATACATTTGCCCAAAAGTCAGGACCTGATCCTACCCTTCAATAAGCCTAACCCTAAtccttaaccctaacccactTGTCTTGCACAACTTAAAAGTCTACCCCTAGACGTTCGGTTCAACTCTACCCAGGTTGGGGGATttggatcaggtctgactccactgTCTGGACTATTTGCTCGATTCTACCCAAATTCGACTCAGTCTAGGTAGGAGGATCTGAATCAATTCTGACTCTACCCCCTGGCCTTTTGATTTGACTCCACCCAAGTAAGAGGCTCTGGATCAAGTCTGACTctaccccctggacttttggtacAATACCACCCTGGTAGGAGGATGTGGATCAAGTCAGACTCCACTCTGTGGACTTTTGATTCTACTCCACCCAGGTATGAGGACCAAGAGATCACGTCTGACTTCACGCCCTGGACATTTAGTTTGACTCCATAAAGGTAGGGGGATCTGGATACAGCTCTATTCCCTGAAATTTTGCTTCAACACTGCACAGGCAGAGGGTCTGGATCAGGTTCAGCTCTACCCCCTGGACCTTTGGTTGTGCAGTGAGCAGTACTTGGAAATGGTGGTCAAAGATTATCTGACTTTTGGTGAAGGGTGCAATCATATACTTGATCATATACTTGTTCCACATAACTAGCTCACCATACTTTATTACTTCACATTAGCTACAGCTTTTCAGTCTAGTCAATTAGGCTcctgggcaaccaaaacatgggactgggtagctaataaatttatgatttgtcatgtatatgaatatacatacatattttttcatAGACTAGTCTTCCTAAATTCAAGTAATGAATCTTCAGCAGAAACATTTATTGCACAGACCAAAATCAAATCAACGATtaagtttcattaaaaatgggAATACTACATAACTCGTACTATCTTTAGAAATTGAAATGTGGGTAGGTCAGTAGGTCATCAGTGATATTTGTCTTCTATTCTAACAGCAgtgtgcattaaaaataaacccaGAGCAGTTTGTTAGCAACCACCAGCGTCAATCCTCTTGATCCATTCTCTATTGGTTTTACAAAACATCAAGGCAGATTATTAAGTGGACTCGAGAGTTGGAGGGATGTTCGCTACGctcctaaaaataaaagatgaagcacacacacacaaacacttgagACAGAGGGGGGCTTAGAGTCACAACTAAATGGGTTTTTGTTTATGACTTGTTATCAGCTTAGTGTAGCCAGGGAGAGACAGGGTCTTtgagagaaacagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcgctacaCTGATGCAGAAGTGACAGGAAAGAGGACAGAAGTGAGAAAATCTCATTTTAAGCAGTTTTCATCTAAAAGAAGACTCTCACTGCTAGTGCAAAAAAAGGCAGTCAATTTTtctccctttaaaaaaaattcccctcTAGTCGAAACACTCCTCTCCATCATGGCCCTTTCAAACCCACGTCCCTGCACACTTCATCACTCTCACCTCTCGTGCCTGTGTTGCGCTTCTGCAAGATCTGTCTTACCTACTGAATGCTGGAAGTTTCACattaacacaccacacactaacaaaaaaaaactaaatctaTGAACctgtgagagagaatgaaagaacaCGTGAAAGAGTGTGCAAAAGGAGTCAAGGAAAGGTGAAGAGGTGACACGCTATTGAGTGGTCAAGCTAATTACTAATTAACCTGAGCTAAGTAATTTAGTGGCCTGACTCAGAGAGACGCAGACATAAGAAGCAAggaaaatggatgaataaagaaggaaaagatGGGAAATAAAGGTGCTATTTTGGTGTTATTcatccttttcctttttctcatttttagaAAAGCGGCCTTCAATGGCAGATTGTCAGCAGGAACAATAGTCCCGTCTTTTGAATCGCttcataccacagcgctgttaaattctcaattctaaCCGTCAATCTGattaatcagaaggtgttggtttgttttctataacagcagctctcacagtagCTCCAAGTGCAaggtttaatacattttaatacatattctatagtaacaacttacacaaggacttgtgtaagtgtgtgtaattgttgatttggcttTCTttgagtgtcagcactttgcaacagtcagaagGGACGCTGTAACAACGTTTTCCACCACAgcaaagttttcaggacagaggagtttatgctttacGATTTCTCAATAACAAGACgagccacattttttttttgaagaaaaaaagatgcttgtcaggaaacaaacatttatagctgttataataaagCGATAACAGGAAGCAGCTTGTCTGATGGACcctctgcaacattaaatgcaactataaatggacaaaatgtcATTCTTTGTCACTGCATTCTGGCTTTGCATCAGGGCACCACCACGccactgattaatttcctactAATTCCTATTAATTTCCTATTAATTAACTGCactccttccacacacacacacacacacacacgttttattgtcttttatgGCTTCCTTCCTAATCCCAGAAAGATTGACAAGGACAAAACCTAGGATGAAACAATTCCAAATAAATCATCAAGAGCTCATGTGTAGACGGAAGCTGATACTTTACAGGAAAAAagagagagagagagagagagagagacggcatGCACTCCATTGTGTGAGAGGTCACAGGAAATGACATCGTGTTTAATCTTGACACCTCACCCACATTTCCTTTCTGCCGTGACAGCATTTAATTGAAGATGAGACTTATCAGATTAAGCATCTCgctactcaaaaaaaaaaaaaaaaaaaaaaaaaaaatccctcgcTCGAATACGTGTGCAGAGATGCCGGTGAGGGACTCGGAGCCGGGGCACGATGGCAAGACGAGTTATTTTAGAGAAATTGACGTGACGCAGTGCAGCGAGGGAGCGAGGAAATCTAATTAGCCATTACGGATGGGGAGGGGAGCGAGGATCAGAGTTGCACACACAGATGGCACGGAGGAACTGAGAGACAAAAGGAGCGGTGGACTGAAGGGAAGAGGATACACGTCTCTCGTCTCCTTCCTTCACGGCGGCGGCGGCGGACggaaagaaaacatttagtCTGGAAGAGCGAGCGAGATTCTCGCTTTTTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU202688 lncRNA downstream 12115 24766910 ~ 24801063 (-) True G171258
TU202651 lncRNA downstream 157925 24598275 ~ 24655253 (-) True G171232
TU202589 lncRNA downstream 269204 24514909 ~ 24543974 (-) False luzp1
TU202594 lncRNA downstream 284482 24528327 ~ 24528696 (-) True G171184
TU202554 lncRNA downstream 318388 24418931 ~ 24494790 (-) True G171160
TU202679 lncRNA upstream 5420 24827641 ~ 24902040 (-) False G171256
TU202686 lncRNA upstream 8711 24830932 ~ 24842190 (-) True G171257
TU202675 lncRNA upstream 34670 24856891 ~ 24868017 (-) False G171256
TU202682 lncRNA upstream 34670 24856891 ~ 24926224 (-) False G171256
TU202841 lncRNA upstream 185878 25008099 ~ 25009389 (-) True G171381
XM_034308381.1 mRNA downstream 269099 24490238 ~ 24544079 (-) False luzp1
XM_034308380.1 mRNA downstream 269099 24490238 ~ 24544079 (-) False luzp1
XM_034308379.1 mRNA downstream 269099 24490238 ~ 24544079 (-) True luzp1
XM_034308382.1 mRNA downstream 275343 24490238 ~ 24537835 (-) False luzp1
XM_026926874.2 mRNA downstream 350242 24454401 ~ 24462936 (-) True tmem30b
XM_026926062.2 mRNA upstream 151818 24974039 ~ 24991828 (-) True cep295
XM_026926064.2 mRNA upstream 151818 24974039 ~ 24991827 (-) False cep295
XM_026926447.2 mRNA upstream 187562 25009783 ~ 25046786 (-) True si:ch211-266o15.1
XM_034307977.1 mRNA upstream 234143 25056364 ~ 25106759 (-) False nid2a
XM_034307978.1 mRNA upstream 234143 25056364 ~ 25106759 (-) False nid2a
TU202681 other downstream 6083 24801083 ~ 24807095 (-) False G171256
TU201673 other downstream 1949411 22855494 ~ 22863767 (-) True G170435
TU201211 other downstream 2697302 22115565 ~ 22115876 (-) True G170023
TU200304 other downstream 3995962 20814561 ~ 20817216 (-) False grem1b
XR_003403127.1 other downstream 4080126 20732930 ~ 20733052 (-) True LOC113530231
TU203072 other upstream 436618 25258839 ~ 25259209 (-) False G171569
TU203074 other upstream 436618 25258839 ~ 25259362 (-) True G171569
TU203284 other upstream 756718 25578939 ~ 25582527 (-) True G171734
TU204658 other upstream 3077270 27899491 ~ 27910890 (-) True si:ch73-204p21.2
TU204659 other upstream 3077270 27899491 ~ 27910890 (-) False si:ch73-204p21.2

Expression Profile