RNA id: XM_026926287.2


Basic Information

Item Value
RNA id XM_026926287.2
length 8564
RNA type mRNA
GC content 0.44
exon number 14
gene id samd4a
representative False

Chromosome Information

Item Value
chromosome id NC_047604.1
NCBI id CM018550.1
chromosome length 29376037
location 25258811 ~ 25318277 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CTCTCCTCTGGACtggaggaaggaaaaaaaaaaaagcccaagcAATGCTGAGTCTTTGCTCTGGACTGGGGGCAGCAGAAAAGCAAAAGCAAGCCTGAGCCTCTCCACTGGGACTGTTAAGGAGgggggataaaaaaaaaaaaagaaagaaagaaatgttagGACTCCTTTTTGGACTTTAGGGAGGAAAAGCAGGGAAGGGAAAGCAAAAGCAATGCTGGTCTTCTGGTCAGGAGTGTAAGGAGAAGATATACTGTAGCAATGCTGAGTCTGTTGTCTGGACTGAGAAAACTTGGTCAACATGGCCAAACCCTGGAGTGAGCCTGAGTGAGCTGGGGCTTTTGCTCCACTCCAACTTTGAACACAGCACTTTGGATGCAACACATGCATACTGGACCTCAATGCAGTCTATTTTAAGGCTGAGTGAAAATAGCCTGTATATGGGAAATTATAGACATATTTGTCCTGAGAGTCAGAAGAGTCAGCAGCTTTACTGAGTCCTGGACGCCTTCTGTACAGGAAATAAACGGATCGAAGGTGTTCCTGGTGAAAAATGCCAGCAGCAGTAAATCTACATTAACGCAGGACAGCCATCACGGAGTGTCTTTGTTGGGTTATCACTCATTGCCAAAATCTTGGAGGAGAACACCAtctcatatcatatcataacatAACAAAGAATGACGAGACAACACTTGAGTCCTCATTAACCACGCTTGACCCCAAGACTTCAGAGCAGATAAATTTTTAAAGAGCTTTTCCAGGATTCGTCTGTGAAGCAATTCCCACCACATTGAATACATCCATCTCTCTCATTAAACCCACGTCGCAGGCTTCAAGTGCGGCCCACCAGACCATGATGTTTCGTGACCAGGTGGGTGTCTTGGCCAGCTGGTTTAAGGGCTGGAACGAGTGCGAGCAGACCGTGGCTCTGCTGTCACTGTTGAAGCGGGTGAGTCGGACCCAGGCTCGGTTCCTGCAGCTCTGTCTGGAGCATTCGTTAGCTGAGTGCACGGAGCTGCACGTTCTTGAAGTGGAGGCCAACAACCCAGcGGTAATTGGCCAGTGGCAGGCCGAGCCAAAAGAGCGTCTCATCTCTCTGGTCCTGACCCATCTGCCCCTCCTCAAACCGGGCAACGGCGAAGCCAAAAGCGAGTACATGCGGCTACTTCCCAAAATCCTCACCCACACAATCGAGTTTGGGCGGCACCTTGAAGAGAGCAGGCAGCTGCTCTCGTACGCTCTCATCCACCCGGCCACGTCTCTGGAGGACCGGGCCGATCTCGCTCTCTGGCTCAACCATCTGGAGGAACGGGCAGCCACTCGCActgctggaggaggaggagattcATTGGAGCGAGTGCCTTCTTCTCATCATCTTTATGCCCAGCATCAGCGTTACGGCTCTGATGATCGTCTCAATGGCTGGCAGGGATCCCGAGACTCGGGCATTGCCACCTGGcacacacagcaacaacagcagggCTGTGAGAACGGACATCTTCTTCTATACCCATCATCATCAGTCCCTTCTACCATCaatacagtgggcacaggaagTGGAAGCAACTCCAtcctGCAGTCTGCGGGTCAGCACAGTCCTCTGAAGCGCTCCGTCTCTCTCACTCCCCCCATGAGCGGCTCATCCACTCAGCCTCTGGGACACGGCTGGCTCTCACAGGAGGACCTGCGGGGACGGGGGGCACCTCTCACACCTGACCACGCCCCTCTGTCCCCTCAGAGCAGCGTGGCATCATCAGGGAGTGGCGGCAGCGAGCACCTAGAGGACGGCTCAGGCTTGGGCATGGCACTCCGGAGCTCTTTCAGCGAGGAGGGGAGCGGCATGAGGGATGTCCCGGCATGGCTGAAGAGTCTGCGTCTGCACAAGTACGCCGGGCTTTTCTCCACTATGACCTACGAGGAAATGATGTCGCTGACGGAGCAGCAGCTGGAGGCACAGAGCGTTACTAAAGGGGCGCGGCACAAGATCATCATCAGCATCCAGaaactgaaagagagacagaacatgCTACGCTCTCTGGAAAAGgaTGTGTTGGAAGGCGGGAATCTGCGTTCTCCTTTGCAGGAGCTCCATTATATCATTGGGACTCCCATTAAAGCGTTCAACAGCGTGGCCGAGTCTCCACAGCGCCCCCTACTGAGCGCCGAGGGAAAGAGCGCAGccactggagtgtgtgtgagcggagGGGAAGCTGAGAGCAGCACCACACTCATAGCAGAGGGGGACATTCCTGCTCAGTTCACGCGCGTCATGGGCAAAGtgtgcaCACAGCTGCTGGTGTCTCGGCCGGATGAAGAGAACATCAGCTCATATCTGCAGCTCATCAATAAGTGTGAACTCCATGAGGCGTTCACAGAGACGCAGAAAAAGAGATTGTCGTCATGGAGGCAGCAGGTGCAGAAGCTAGTACGCTCGTTTCCACGGAAACCTCTCCTGGACATGACTGGCTACCGTCAGCCGAGGAGCCGTGGTTTCGGTCAGTCCAACTCCCTTCCgagcgctgtgtgtgtgggcagcagtgtgtgttccCGGAGAAACCTGCGCCAGTTTCCGGTGCCATCGCGGAGTCTTCCTGCGCCCCGGCTCGGCCTGCTGGGCACCACCggcctgctcacacacacgcacacaccacgCAGTTCCAACAACACACCCACCAACCTGAAGCAGGGCAGACaggGTCTATGGTTTGCTAACCCGGGCGGCAGTAACAGCATGCCCAGTCGCACCCACAGTTCTGTGCAGAGGACGCGCTCGCTACCCGTCCACACCAACCCACACACCATGGCCATGTTCCAGCAGGCAGATCTGCAGGTTCCTGTGACGGAGCCAGACATCAATAATCGATTGGAGTCTCTCTGCCGCAGTATGACTGAACACGCTCTAGAAGATGGTGTTGATCGGACGTCCACTATCTGAAGGAGAGCACGAAAAGGAGGCAGAGCTAACCATGAATTGAAGATGCGGTGGAGGGGAGGGCCATCTGTGCGGCATACACCCGCTTTGTCCTTAAACTCCGCCCACTTGCTCATCTAACCAACACACTCATTGGTAGTGGAAGTAATAGCTGGTGGGTGTGGCCTACATGCTACCATTCACCTTCTTCTGAAAGCCTGCTGCAAGTGACCAGctcccatcatcatcatcattatcatttttcatcatcatcatcatcatcatcatcatcgttgccatgactactttttttttttacattaggcATTGGATATTTTTGGGAGATAAaaagagaacaaacaaaaaaaattataaaaccgATCAAAGGTACTGTATGAGGTTTGGTGAATGTGGAGAAGAGAACAGAGGAATGAAAGATCCACGAGACTTAAGGATTGTGAAGCTGTCTCGCTGCACGCCGAAACCAAAAAACAGCCAGTAATCAATAAACACACGCTAAAAGCCAGGAGCTGATCATAACTTACCAAACCAAGTCGTTTACACACAGTTATCAGTTATCATCTCCAACAGCAACATCCAGCATCAGTTTACAAGGTTTTAGTTTTTCTCGGATTCACTTGGGAATTTCCCGGTCATTTGGGaagctgttttgtgaaaatTTGAAGAGTCAGAGCAGCAGTGgtcagagaggagaagaggaaggaatgagagagagacagagacagagacagagcaaaGGGGGAAAGGGAAGTGACGTAAGCATGTGGAGGATGTGAGGTAGAACAAGGAGGGGGAAGGAATGTCGTAAATGGAATTGGACGTCAAGGGAAGTGGACGAAGGCATGTGGTAAGTCAGGCTAAggtggatgtttttgtttggaATGGAAAGAGGTACTTGGCAAGATCTCCTGCTTGAAATCGTATTTGATAGATCACTGATTTTGATCATGTTTGTATTTGAATGTCTTTGGAGAAGATTAACAGAAAGTGAGAGTCATGAAAAAGGCTACACTGGACCACTGCTCGTCTGGGGCCGTGCTTATTATTCTCAGCTATATGCTCagattgtaaataaatacataaatataaatggacaCTTCCGTTAGAGAGGGCTTAGAGAGCTTTGTTTTGCATAATACTATCCGCATGCTGGAGTGACTGGAGGAAATTTACTAAAGTATGTAGCTCCACCTGGTGGCCAAATGATGTAACAAGCAGTCATGTGCCCTCGCATGGACACTCAGGCATTGGTCAGAAAACACACTGATATGTGATGATGGTTTGTGGGCGGAGACTAacaattttttccccagtgtgaCCAGGAGACATCTCAAAAATAGCTACTTTTTTAGAGTTGAGTGAACACGCTCAGCTAAAGTCGGACTGAGAGCACAGTGATGCTAAACACGTCATCCCTAGCTATATGTTACAGataacctttatttataaaCCAATATGTCACCAATTTCTCAGTGTTAAAACTGATACACATTGTGATTCACTAATGGAAAGACTCACTGTATGAAGACATCTTATAAGAACAGATTCAAAGCGCTCTAGCTTTTGAGACGTTTCAGTAACAAAATGCTAAGATGAATTTGTGCTAGCCTTTAGTTAGCGCTACAAGGAAATGAgctgttgtgtatttttttttcccagtgttgTCTTAAGGTCAGGTAGTCTATTAGCATATCACGTTTGTAGgtttacagtgtggaataaGCTTTTCAGTTTAACTTTGTGAATCTCGGCCTCTTTGTGATTTTTCACTTCGAGTAGCTGTTTGATTTTCTGCATGGAATAGAACGTTAATTAGAAATCTATAAGGGTTGTTGATTTTTGGGGCGATTTAAAGCCCTTAAAATgagggtgtgtagagttttgtgtaatcatagtttttttttctaatataagATCTTGTTTGTCGTGCACTCGGTGCTGTGAAACGCTGAACTATTGAAAGCAAACACTCTTACGTGCAATAGATTGGGCAAAGCGTGCTGGAGCACACAAAGTAGATCGTGAACTAGGGGTGTGCATTGGGGCTGggatccctttttttttttttttttttttaaccctaactctaaccctaaccctaaccctcatGCAGGCAGGAGCGGGAGTgggagcagtcagatatgaagcttgtgagACAAAGAAAGTTTCATTACCATGGGAGTGTGCTCGTGCGACgttttttctgcatttaatcattaatctttagtaaatgctttatcctgttcagggtcatggtggtttaaataaCCAGATTAGAAACAACGAAGTTTGTTAGAAATTGTAGCATACAAGTGTAAACAACAAATAACTGCCAGGgttgggatttaaaaaaaaaaaacagtcccacgCACACCCCTATCAcaaatgacagtgtgtgtgtgtgtacgcttTTAGCTCTTCACTGCCAACAATACACTACAATACCATAATAGAGTTATGAACTAGAGTTACGGGCTGTTGGcttcacacacagccacacctcAAGCTAGATCACGTCCAAAGATGCTATCACACGTTAGCAAAGTgagaaaagcaaagaaatagTCCAAAGTGCTGAGTAAGGGGTCTCTGCTGAACAAAAGTGGCCATTTCTCAATTGTTGGAAGTGAATTAATAGCAGACATGACAGTCAGACTGAAAGATTTGTAGCTTGCAGCTAAGTTATCAAAGGTGTTTAATGTTAGATGCTAGATAAGACTAAACCTTACTATTGGCTAGTTAACTAGCAAGCTATCTAAGCTAGCTTCGGAGTATCAGTGAACCCTTAAATCTAATTAGATAACTAGCTGTTCTACTGTGTTTATTCTATGCTATGCTAGTCAGAAAAGAAGGAAGTCTTTAtgacaaaatcttttttttttttttttttaagcttgtgTCTAACTAACTAAGTTAGCTGACACTGCTGCATGTTAATTAGCTAGCACCGCTTATTTTTCTTTAGAAACTTCTCTTAGGTCTCACAGGCAAAAGATGGGATTTATGAATCAGAAGAAGAGTATTTTTTCTGTGATAATTTTCCTAATTCACAGAATTTTTCGTCAGAATTTTAGCAATAATCGGTTCACGCTGGCTAATTAGCTACGTCCTGAAGCTTCACCTTCTTTATCAGTGGTGCTTCTTTCTTAACTAGGTCTGATTTCTCTCAGAAACACAGATCCTATCTCACACAAATCCCTTTAAGATAATGTAAACTGTgacttaatattaataattaaaaaggcAAATGTCTTTTGAAACACACCCACACGCCTGAGAAACTTCTACTCTTGTTCTCTAGAGACTTGTACTTGAAAGCACAGAATGAGGCACTTTGCTACGTTCCCTAAGAATGATACTCTCATTGTGAGTTGAAAAAGATGGGGCAGAGCATGGACTATCActgccttacacacacacacacacacacacaaaacgcaTGGTAAAAAAGTCGCCTCAGAGAATGCCTccattttgtgtgttatttaatagCGCTTTAAAAGTGAGATGCGTTCAATGGCACCCTTAATTCTGTAGATCATTACAAGTCATGCTGTTCTGAACTAGTAGGCTTCTTTCCTACATTTGATTAACCTTTAAAGGAAGATGTTTTGTAGAAGCATGCTCTTAAACTGCCGTGAGGCTTCATGTGTGTGGGTCTCATTCGAGCGGTGCGTTTGTGTAATAGCCACTCAACACTGCCATTTGAACGAACCCTATTAGCAGAttcaaatgattatttattcattctttttttttttctattattgtCGCAGAGATTATTGTATTCATTAGATGTATTATTTAAGATACCGTATGTATTAACTCGCTATGGCTGGTAACCATAAGTACATCTCatatcattttgttattttgttgtttctttttttctctttatctaaaaaaactgtattttatagTCCTTATttgattttgttctttatttgcTGATTTGTTTCGTCGTGTAAATTGCTCGCTCTGGGATCCCGATGGCCTATCGCATGCTGTACAGTGCAGTGTTGGAGTTTAGGCCTTGGCGTTTTAACACGTCATTGTAGATGATAAACACAAAGCTGACTTCTCAGATGGTTTTTGCAGTCGTGTGGCAGTGCACGGTCGCCTCAGCAATCAGCATGAGATGATGCTGTGAGCTTCCGAACTagtttaacacacactttacGCTGTGGATGAGACTGATTTGTGTGTGCTTGAAATAAGGAACGATTCCTcagtgtgtataaatatgtgtggtggtctgggaaaacccttagGATGTCGGTGCGGCTGCCAAAAACGATGAAAACTCCAGGCAGTAATGTATATTGACGtttctactttaagaaaacgtAAGTATATTTTACCAAACTTGCGtggtttttatttaggctactttctaGCCTCGCCTTGACATCTGCCTACAAAGATCATATTATGTAAGGAGCCAATTGTTAAATTGTATAACAACTGTACAACAAATACAGCTATAAAAActgtcagtctgcctaaagatatctaaaatgtctaaaatttCTCTAGTTAAGTATGATTTTTGCACGAGTTGTTGGAACGAAATCAGCTTGAAGGGGTGGTCACACTAGACTTTCGGCATGTGAAATTTCTTCGGAGACCGCTgcgaatgaatggatggattctggattctgacgTGCTTCTCTATAGATGttgattttatattcttttaaagcTGTGTATAAAACGGGAAAGTGTGACACCACTATAATCAGTTCGtcctccatcttggatttttttgAAGAAGTCACGCTGTGACGTGTCGATCTTCTACTGGTCACATGTCTTCACATGATACGAATTCGCATGTCAGAGTTCACCAAATTTAGGAAGTTTGGAACGCAGCGAAATGCGAAACTTCTTCCGTTTCTGGTCTCCAGCATTGGTATGCGTATGAATGGAAGTCAATGGAACTGAAAAGTTCAGTGTGACCACCGTTTGAGCCTGATtaaatcagtttgtaatcagaaaTTGGCTGTCAAAATCAAAATGCCCATGATGCTCCTGCGCCGCCACATCCtcgtcatcatcaaaacaaagaagagtGCTCTCTGtacaaacaacaacagaaaaaagcCACACATATACATGAGCCTACACAGCGTGATTCTGTGGTCATTTGTAACTGCACACGACTGCAACCAAAAGGTCAAAGAGAATGATATTCCaaagtgtttgaattttttttatactggcTCTGTTCATTAGTCATATTGCGtaattatctttcttttttttttttaaggaaaaaaaatgcatctatACTGTATCCTATACCGCTTTACTGTGTCCTTTAATTATCTTCAAGAGCCGATGTCCTGTATTGACTGCAggcttacatatatatataaatattatatacatatatattttaaaagaacatCATATGTttagaaaaaggaaaatttaccaaaaaaaaaaaaaaaaaagtaatttatattttaaaaatgcatgtgagGCTGGGAAGTCGTATTTAGAATAACAAATGGCAgtgccttttctctcttttttttttgacctggATATTTAGCGAAATGTAAAGGATTTTATATGGATTTAAATATTTAGTGGTTAATAACAAAGCTGGAAGCATtgactgtat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU202934 lncRNA upstream 19747 25189165 ~ 25239064 (+) True G171440
TU202920 lncRNA upstream 82578 25175826 ~ 25176233 (+) True G171430
TU202903 lncRNA upstream 123926 25134600 ~ 25134885 (+) True G171413
TU202808 lncRNA upstream 182336 25074277 ~ 25076475 (+) False G171352
TU202798 lncRNA upstream 183811 25073278 ~ 25075000 (+) False G171352
TU203019 lncRNA downstream 70495 25388772 ~ 25389166 (+) True G171522
TU203020 lncRNA downstream 71089 25389366 ~ 25389505 (+) True G171523
TU203104 lncRNA downstream 108614 25426891 ~ 25430922 (+) True LOC113534148
TU203132 lncRNA downstream 199839 25518116 ~ 25522689 (+) True G171619
TU203168 lncRNA downstream 269212 25587489 ~ 25592749 (+) True G171647
XM_026926877.2 mRNA upstream 20220 25206836 ~ 25238591 (+) False gpr137c
XM_026926876.2 mRNA upstream 20220 25206837 ~ 25238591 (+) True gpr137c
XM_034307871.1 mRNA upstream 80914 25176374 ~ 25177897 (+) True LOC117598238
XM_034308043.1 mRNA upstream 85497 25171545 ~ 25173314 (+) True LOC117598271
XM_026926373.2 mRNA upstream 125921 25114777 ~ 25132890 (+) True ptger2a
XM_026926079.2 mRNA downstream 63435 25381712 ~ 25388660 (+) True gnpnat1
XM_026926767.2 mRNA downstream 108729 25427006 ~ 25430929 (+) False LOC113534148
XM_026926768.2 mRNA downstream 108731 25427008 ~ 25430929 (+) False LOC113534148
XM_026926856.2 mRNA downstream 151181 25469458 ~ 25489162 (+) True si:ch211-266g18.6
XM_026926904.2 mRNA downstream 171998 25490275 ~ 25494255 (+) True cx40.8
TU202922 other upstream 81979 25176376 ~ 25176832 (+) False LOC117598238
TU202767 other upstream 251045 25003983 ~ 25007766 (+) True G171329
TU202761 other upstream 258762 24994493 ~ 25000049 (+) False cx28.6
trnar-acg_3 other upstream 829149 24429590 ~ 24429662 (+) True trnar-acg_3
trnah-gug_13 other upstream 829336 24429404 ~ 24429475 (+) True trnah-gug_13
trnat-ugu_12 other downstream 1597081 26915358 ~ 26915430 (+) True trnat-ugu_12
XR_003403449.2 other downstream 1838066 27156343 ~ 27465649 (+) False nrxn3a
XR_003403450.2 other downstream 1838066 27156343 ~ 27465649 (+) False nrxn3a
XR_003403451.2 other downstream 1838066 27156343 ~ 27465649 (+) False nrxn3a
trnak-uuu_7 other downstream 2406930 27725207 ~ 27725279 (+) True trnak-uuu_7

Expression Profile