RNA id: TU203041


Basic Information

Item Value
RNA id TU203041
length 3861
lncRNA type inter_gene
GC content 0.36
exon number 1
gene id G171543
representative True

Chromosome Information

Item Value
chromosome id NC_047604.1
NCBI id CM018550.1
chromosome length 29376037
location 25267902 ~ 25271762 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AGCAATGCAGGctgaaaaatattgaaatatcaGCGCAAATGGACATCAAATCTAGGTGGTGTGCAATCACTTGATTCTACATGCACatatctacagtctgggctagaaagaaaccagccccagcctcactgcTTCATACCATCtggtgtatttttcttacactCAAACTAGGCCcaatcctgttccagcatgatgatgcccctgtgcacaaagcaagatccataaagacatggtttgacaagaagaactcgagtgtcctgcacagatccctgacctcaaccccactgaacatctcatatcagtgcctgacctcactaatgctctcgcTGAACGAGCAGaattccccacagccacgctacaaaatctagtggaaagctttcctaGAAGAGTGAAgcttattacaacagcaaaaagggggattaaatctggaatggcaaattcaaaaagcacatatgaatgtgatggtcaggtgtccacaaacttttggtcatatagtgtacctttgaCAGCttagcaaaaatgaaatttgcATACAGAGTTCCTTGtacaaaatgaatcattttgtgTCAGCATTTCCAGTAGAAAACTAGGTGTGGCACGGAATGCCTCGAAGTCTGGCTCGAGGTGCGTTATAAAAATGCACGGCTCTCATTTCAAAGTCGCAAGATCAGCTACTAATGTCATTACATAATACTCACtattgagctgcttttcaaaaacacacagctcagtTGATGAAAACTTCCTTATTATacaattactttttattttatttgttataactTTTTATAGCTGACTTTATATGGATTTATATGTAGCTTATATCTGTACTTACAAGATGTACTCACTGcttatcttagcaagtgaagatatcCTGAAGCACaagttatctaatatttctcattgaGATTATGATATAACACATCTAAGatcattaaacctatttctagacatgtCCAAGCTTAAATTTGTCTTATCTTATTAGcggataattttgcttctttctagaaataagtAAAATTATTTGCCAGTAGAATATgaacaatttcaagcttgaaattagtgaaaaaaaatctagaaataggctttATAATCTTAGATATGTTCAAAATgaatctaataaagagaaatagttgaatttgcctataCTCAAGATATTTGACTTGCTAAGATATAATCTTTGCAGTGGAAAGAGTGtgcaaaatttttattttttttaaagaataatatattttagaagACACATAACAGGGAGCTCTGTTCTTGTTTGCGTTCCCTTATGCCAATGCAAAacaatttactttaaaataaatttcaagcCATTTTGAGAATACTGACGTATAAGCCACTCATAAATGCTCATTCATGAATACATTAGTGCTATGAAGTCCCTACATTCCCTTACATCAACACAGGCACATTATGTAAATGTTCTTTAATGCTTATGCACAGGATATGAAGTCCTTATGAAACTAGACATTAAGTCTTACCAACTAACGCATCCATTTATCTGTGCTAAGAAATTTCAGACAAAAAGAGCTAAGTCTAAGATTAGGCATTTCAAATCAACATACATATCGGTGtatacaaagagctgacactggagactccttcaataaatgataaataaattgCATGTGCTTATTAATCCATTCGtatctgccgtacaagtcccagTGTAGGTTGCTGCTACAGAACCGATAGCATATTTAAACGTATTTGaaccttctgtccaatcagagccAAGAATAtaacagtactgtggtataagtactCTTTAAAACACCACGTTAACATGTATAGCACAATCTTCTTGTAGCCATGTTGATGTTTTAAGTCTGACATTTACTGAACCAGACCCAGCTGCTAATCCTTAGCTGAGATTTATAGACTACTGAAGCAAATAATTCAGCCTCGAATGTACTCAGTGtctgatgtttgtgtgtttagttttgtaGAATGtagtaaaattaaatgaaaaagatgcaaaaaaaaaattaggactATATTATCAACCAAATCAGTTCTATCATGCAATTTCTGCCTTCAAattctgtccatttttatagACAAGTGTCACATAAGACACTGAACACCTCCACTGTGgtgaatatgaaatgattagACAGTGTGTATAATGCTGAACCggtagctataagcttccattactACACTATTCTGATACACCTGTGTAAaagttagtttttaaaaaaaagcatattaaatTGCTAGCTGtgattattaagaaaaaaagagtatGGACCTTGATCCGGTCTTTCACTGAACAATGTTATGGGGTAGACGTTAAACTTTTAAATCATGATAATTTTCCAATCCTGTCAGATATTATCCCAATTCTGAAATTTCAGCCCTTACAAGACATTTGTCTTTAAGCTGTCTGTCCCGGAAATGCCTCGGGCATCAGTATCGTTGAATATTGTCTTGGTCTTGGCTGAGAATTTGTCAAaaatagtgtttgttttttaagctttttattCTGTATGCACAAATTTTGACAAGAGCTAATtgcttcttctagaaaacagagCCTAACCATTGGCGCAATCCATTAATGAAGCCAACTAGCTGAAATAAAGGTTTAGCTTAACGGTTTTAACTCAGCctcactttcatttggacttgatCTTGACTTGGACTCCTTGACCTCCTTTAACTCTGTCTTTACTCAATCCTGGCTAGTTCTGAtcttggacttgacaatggCGGTCTTGACTACAGTCCTAACACTTTCCTTCTTTATATAATGTAGGAATAGCAGTGATATTGTCAATGATCTCCGATAACAATATCGTGATACACTGTATAACTGATTATTGTCATACACTTTAAAGAGGATGACAAAAAGGCAGTGTTTGGATCAAAACATTTAATGCAGGCTCTCCGTCCCATTCTGTCCCAAGGTTCATATTAGTGCCTGAAGCAAAGCACTGTGTGCCAAAAAGAAACAGTTTGCTTCTGTGTGGCTGTGATGAAACAGCTCACCAACCCTAAAGAAGAAGCACAATTTCTTCCCAGACAGCATAAAAATTCTGTTCGGAGCAACAAGGAGGGTGGACAGCCATGACAGAGCAAGTGTTTGGGTGTTGGCctggaaaaacattttataaagccAGTGGATGGAGAAATGGAGATTTAGCTTCCAATACATCTAGACTACTGGTATGAAAACGCTCACTGTTTATTAACCTCTTCAGACACTGCTTCTGTTGTAATGATCACATGGAAAatctgcttcattttaaattatccataacgctgctgaattctcgaatccgACTGGtttcggaaggtgttgattaatattctataagaGCAGTTCTGACAattgtaattttgtaaaaaaaagggCACTCTGTATAAGCCacacctaataataaacaaaaaacatgttgttttccaaagaaaaatgtctaatcaTTGAGATGAAATTTTCTCTaaagagatatttatttaacatttatagaaggagtctccagtgctagCGCTTTGTCACGGTCAGTACGTTTTCCGCCACATTAAAGTCTTCAAGACTTTgctctttctggtttcttggtaacatgacaagctgtattattctgatttattaacttcaagaaagaggaaaaaaaagaggctggtgaggggatgACTTGTCTTGTggttgttccacaacatgaaatgtaactaaaaatggataaacGCATGCTGTGTCATTCAtaataagttaaaaaagaaatcaaaaattGTAActcttggcaaattgctgcaagataagaggaataaaacactctgggacgtgctgttattgggaaataatcaacgtcaggtGCCATAACACCAtccagtcactgattattttcc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU203043 lncRNA downstream 1932 25264368 ~ 25265970 (-) True G171545
TU203040 lncRNA downstream 5375 25261608 ~ 25262527 (-) True G171542
TU202841 lncRNA downstream 258513 25008099 ~ 25009389 (-) True G171381
TU202682 lncRNA downstream 341678 24856891 ~ 24926224 (-) False G171256
TU202675 lncRNA downstream 399885 24856891 ~ 24868017 (-) False G171256
TU203078 lncRNA upstream 14280 25286042 ~ 25286781 (-) True G171572
TU203076 lncRNA upstream 15390 25287152 ~ 25289502 (-) True G171570
TU203079 lncRNA upstream 19664 25291426 ~ 25291938 (-) True G171573
TU203103 lncRNA upstream 117821 25389583 ~ 25389871 (-) True G171594
TU203256 lncRNA upstream 197742 25469504 ~ 25470074 (-) True G171710
XM_026926785.2 mRNA downstream 15599 25240086 ~ 25252303 (-) True ero1a
XM_026926883.2 mRNA downstream 61429 25182416 ~ 25206473 (-) False txndc16
XM_026926884.2 mRNA downstream 61429 25184047 ~ 25206473 (-) True txndc16
XM_034307981.1 mRNA downstream 161143 25056364 ~ 25106759 (-) False nid2a
XM_026925989.2 mRNA upstream 48748 25320510 ~ 25335259 (-) False gch1
XM_026925990.2 mRNA upstream 48748 25320510 ~ 25335257 (-) True gch1
XM_026926034.2 mRNA upstream 64784 25336546 ~ 25361861 (-) True wdhd1
XM_026926036.2 mRNA upstream 64784 25336546 ~ 25361859 (-) False wdhd1
XM_026926815.2 mRNA upstream 97743 25369505 ~ 25371805 (-) True socs4
TU203074 other downstream 8540 25258839 ~ 25259362 (-) True G171569
TU203072 other downstream 8693 25258839 ~ 25259209 (-) False G171569
TU202681 other downstream 460807 24801083 ~ 24807095 (-) False G171256
TU201673 other downstream 2404135 22855494 ~ 22863767 (-) True G170435
TU201211 other downstream 3152026 22115565 ~ 22115876 (-) True G170023
TU203284 other upstream 307177 25578939 ~ 25582527 (-) True G171734
TU204658 other upstream 2627729 27899491 ~ 27910890 (-) True si:ch73-204p21.2
TU204659 other upstream 2627729 27899491 ~ 27910890 (-) False si:ch73-204p21.2
TU204662 other upstream 2640475 27912237 ~ 27912544 (-) True G172919
TU205159 other upstream 3565130 28836892 ~ 29050026 (-) True G173287

Expression Profile