RNA id: TU203821


Basic Information

Item Value
RNA id TU203821
length 1007
lncRNA type read_through
GC content 0.33
exon number 2
gene id G172212
representative True

Chromosome Information

Item Value
chromosome id NC_047604.1
NCBI id CM018550.1
chromosome length 29376037
location 26894768 ~ 26959616 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ttttttttttaaatataacatatatttatgtttcGATTCGCAATGCTTGTCGTCTGGTGTCTGTCATTCTTCtaacgtttatttatttctattctcCCTCTCCTAAAATATCAATCACAACGATGGAGTTTTCGAGAAAAAAATCCACGCTCGGCTCGCGCACATCTATCACATCGTTGTTTCTGAGAATTCAAACATCGATCAAGTTGcactttaggaaaaaaaaaaagtttccagaGACACGTCTGTCAATGTAAGATTTTACTCCCAAAGAAACATGTTAGAGGTTTGTATACAGAAAAAATTCTTGTTAGCAACCTTTTAAGTTTCAGTTAGACTCTGAAAGTCTAAAATCAGAATATCATGAACTACCAAAAAAGTAGGGTTTATGGGAAAGTCTTAACTtgagtcttgttttttttttttttattattattatttttttattgtctttatcCGTGTCACCAGTCTTAACACCTGCTTCATGTGCTTTCCCTGCTTCTCTGCTGTGTgcatgtacatatttatttattatgaataataacttcttctctttgttctttcacaaaaacatgacttttttttcgtCTCTGGCAGCTCCAGAAATCCTCGAAAAACGTGCACGCAAGTCCACAGTGTGCACGCTCTCAGTGCGAATACTACTGATGAGAAAGCTTCATCCGTAACCTTTCCAAATGCACGCAGAatagtttttttattaaaaaggtGCTGAAATGAACACACTGTGGCTTTCGTGCCTCGTCCTGTACTTATTCATTCCTTCGTTCTTTATCACTGTCCTTGTTCTTTTATGCATTCatctttaaatttaatttgttaaaaaaatcgTTAATGTTGGGAAATGTGTTGGTAGATGGCCTTGTTTTCTTgtcctttaaataaaaaaaagacccaCTGTAAAACACGAGAGCTTAAAGAAGGTATATAACTTGTATAAATATCAAAccatattacataataaaagGAAGAATATTgttaaaaaaaaa

Function

GO:

id name namespace
GO:0019538 protein metabolic process biological_process
GO:0030163 protein catabolic process biological_process
GO:0009056 catabolic process biological_process
GO:1901565 organonitrogen compound catabolic process biological_process
GO:0009057 macromolecule catabolic process biological_process
GO:1901575 organic substance catabolic process biological_process
GO:0044248 cellular catabolic process biological_process
GO:0044257 cellular protein catabolic process biological_process
GO:0044265 cellular macromolecule catabolic process biological_process
GO:0006508 proteolysis biological_process
GO:0051603 proteolysis involved in cellular protein catabolic process biological_process
GO:0022624 proteasome accessory complex cellular_component
GO:0008537 proteasome activator complex cellular_component
GO:0004175 endopeptidase activity molecular_function
GO:0070003 threonine-type peptidase activity molecular_function
GO:0004298 threonine-type endopeptidase activity molecular_function

KEGG:

id description
ko03050 Proteasome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU203819 lncRNA downstream 24149 26870347 ~ 26870619 (-) True G172211
TU203813 lncRNA downstream 65039 26829318 ~ 26829729 (-) True G172207
TU203802 lncRNA downstream 121718 26772132 ~ 26773050 (-) True G172196
TU203600 lncRNA downstream 299285 26595281 ~ 26595483 (-) True G172016
TU203440 lncRNA downstream 836259 26058245 ~ 26058509 (-) True G171874
TU203838 lncRNA upstream 18850 26978466 ~ 27052034 (-) True G172225
TU204297 lncRNA upstream 506256 27465872 ~ 27491804 (-) True G172635
TU204334 lncRNA upstream 605689 27565305 ~ 27566560 (-) False foxn3
TU204374 lncRNA upstream 764945 27724561 ~ 27725757 (-) False efcab11
XR_004578961.1 lncRNA upstream 804989 27764605 ~ 27768101 (-) True LOC117598276
XM_034308270.1 mRNA downstream 49633 26818900 ~ 26845135 (-) False setd3
XM_034308271.1 mRNA downstream 49773 26818900 ~ 26844995 (-) True setd3
XM_026926840.2 mRNA downstream 99849 26741374 ~ 26794919 (-) False bcl11ba
XM_026926839.2 mRNA downstream 99849 26741374 ~ 26794919 (-) True bcl11ba
XM_034308046.1 mRNA downstream 490779 26363066 ~ 26403989 (-) True si:dkey-288a3.2
XM_034308244.1 mRNA upstream 207 26959823 ~ 26989620 (-) True sptlc2a
XM_026926575.2 mRNA upstream 38815 26998431 ~ 27003962 (-) True alkbh1
XM_026925974.2 mRNA upstream 523265 27482881 ~ 27489113 (-) True dio2
XM_026926481.2 mRNA upstream 569247 27528863 ~ 27557994 (-) False ston2
XM_026926482.2 mRNA upstream 569247 27528863 ~ 27557005 (-) False ston2
TU203284 other downstream 1312241 25578939 ~ 25582527 (-) True G171734
TU203074 other downstream 1635406 25258839 ~ 25259362 (-) True G171569
TU203072 other downstream 1635559 25258839 ~ 25259209 (-) False G171569
TU202681 other downstream 2087673 24801083 ~ 24807095 (-) False G171256
TU201673 other downstream 4031001 22855494 ~ 22863767 (-) True G170435
TU204658 other upstream 939875 27899491 ~ 27910890 (-) True si:ch73-204p21.2
TU204659 other upstream 939875 27899491 ~ 27910890 (-) False si:ch73-204p21.2
TU204662 other upstream 952621 27912237 ~ 27912544 (-) True G172919
TU205159 other upstream 1877276 28836892 ~ 29050026 (-) True G173287
XR_004578919.1 other upstream 1941288 28900904 ~ 28908552 (-) False stmn4l

Expression Profile