RNA id: TU204053


Basic Information

Item Value
RNA id TU204053
length 3310
lncRNA type inter_gene
GC content 0.40
exon number 2
gene id G172405
representative True

Chromosome Information

Item Value
chromosome id NC_047604.1
NCBI id CM018550.1
chromosome length 29376037
location 27565306 ~ 27568639 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CACAGAAACGTGATGGCAGGTCGGAATAACGAACGAacgcaaaataaaataaaaataaaaggaatcTTTTTTTCATAGTAATGGACAAAGTGATATTTACATATTGATGAAATTGTCTTTGGCAATATGATTACACAACGAGGAAATACAGAGTGCAAGAACGCCTCCATATCGACACTTTATCAGGGTGCACATGCCATCAGACCTCGAAAATTCAGAACGAACCAAATAAGACTCGATTCTACTCGCTccggaaaaataaaaataaaaaaacaaaaaacaaaaagaaaacactcggcaaaactttttttaatggcaaCCAACAAAGTGaagcttttaataataataataataataataataataaaaacaaacaatgacaAAACACAAGGAAACACAAGGAGAAGACTGTTATTGACTGTTATTTGCCTGGCTTGGGTTGAGATTTCTGATGCGCCTCCACTCGCCTCTTCATCCTCTCATGGCCTTTTCCTTCGGAAGAGATTCGTAAAAAGGAAAAGTTACGTAGTGagtgttcccttttttttctaaataagaATGGATAAAGACTCACAAATGCTggttttcctccattttctttttttttctgcagtgtaaGGATGGAGAATTCAGTTCTCAGGAgcgatgaagatgatgaagatgatgatgaggatgatgcaCAGATGAAGTCCGTATACGTGCATGAACAGAACAGGCATGCTAACAGGACACGTCACAAATGATCAAGGTTGACATCATAAACATCTGGATTCACTATGATGAGGATAAAGTGTGTATGATATGGATGATATAAAAACACCTCGATGAGCAATTTACAGccaataatgtgtaatgtaatagcGACGGATATGATTACgatgtaatattatattatacatgaCAGAAATGCTACAAGTTTCTCACGTAGTATTatcaaagagtgtgtgtgcttgcacgcgcgcgtgtgtgtgtgtgtgtgttggccaCGTTGCTGTGTATAAACTTACCGGCTTTGGCACTGAACTTTAAACAGACTTGTATTAAAAGCTAAGTGCGTCATCTTTAATTGATAAAAGTGCAATCAGATGGAATTGAGTACAATACGCAGTAGCGTGTAACATGCTCTGggattattttgtgtgtgtgtgtgtgtgtgtatttaatacTGAACAGTGCTACGTAGAGGGAAGaatgtgtgagcgtgtgtatTACCTGTGCTGTGTAAATGGAAGACCccctccccaaaaaaaaaaaaaaaaaaatggaagaaaaggaACAGACACTCACTACCAACTTGCCCTTACAGAGCTGAGCGCTAAGCAACAATGCTgaacgctcacacacacacacacacacacacacacacacacgctcacacaccgGAGCTGATCTGATGGAGAGAGCGGAGAGGGGGGCTGACAGCCCTACACTTGGAAAGAAGGTGAAGTCCCCATATTGCACAGAGTGTTGCCCAACAGTCAGCATTTGTCCCTGAAGAAGGTTATTCTGTAAAATGCCTGCTTTTGTACGATGAGGACaaatcaagacaaaaaaaaaacaaaaacaaaaaacaaaacaaaaaaaaaacaaaaaaaaagtgactgtaGGCCTGTGGGCATAGAAATTAGATTAGAGGCGGTGCCTTTTTGTTCTCTAGGatctatatttatatgaaaataattcatgCTTCATgctaaatacattatttacctTACAactttttgaataaaaaaaaagatcttcgTCTTCTTTACAAGAAACCCATGCAACACgatttttggagaaaaaaaaaaatcctgctggCTACATTGCTTAAAttaagaaagggaaaaaaaaaacaaaaaaaacaaaaaaaggtctAGTGTAACATTTTATACAGTGTTATCCTGACTGGATGAAATTGCTTCTTACATCATGAGGAttagaaaattaaaacataagaaagaatttatacaaaataaaacaaaaataggagtaaaaattaaaccaactaaaaaaaatcccacaaaacatttccacagtcatttcattattttttttatcactaaATTACAATTGGCAGGTTTAGTAGCATCGTTTCTGTCAGGGATTATTTTACTGTTCTGTAAGGGGAATATCACTATGTCACTTTACTTCATTTGAGTAATAACACTCTTTTTGATTGCTTAAGGGAGGAACGTGGGCAGTGAGAACAATTTCTTTGTCTATATCATACATCTAATGTATATTTGCCTCCAAAAAGCACAAAGGCTTATGGCTTCGGATTTATTTCACAGATTAACATTGGACTCGGGAACGTCTGATTTTCAGCAGCTACAATAATCCAGGACCATGCGGCCATGCCGTCGGATCGGATTAGCGCTCAGGGCAGCAAGTGCACTCACACCACACGACTAAGAGAAGTGTACACTACTCCTAGTGCACTAGAACTATATATCACATAACCCCTACACACAGTCGTGCTGCCCGGTCGCATGTGGCTGCCCACGGGACGCTTCGCTTATCGACAGCACTGTTTTCTCTCATCTAAGTGCGTGTGgaattttcttcttatttaatgttaatatcaGCCAAATAAAACCCATTAGTAAAtcagctgaattttttttttttgctatggcTTTaatctcctttaaaaaaaagaaataaaaacaataaaaaataaagaacccTCAATAACTTCACCTATAAAGGTAGGAAAACAAAGTTAATTGTTGATATTGCCACAAATCAGTAGAATTCACCTGATGTCCtggaaaaaaatagtaaattcTATTAAAagtgatgtttctttttttttttctcttcctcataACACAGTTTAGTTATTTTTCATGGACTCTTTTTGCTCTTTCTGGCCCTTGGCCGTCCGGTTGGTGATATTGTTCAAACAGGCTCTGACGCCAGCCAGGTGGAGCAGAGAACCCGCCGCCTCCTTCATCTCCTCGTCATCGCTTTCCGGAGGCTTCTCCGTGCGCCTCTTTTTTAAAGGCAGCATGTCACTGGCCACTCTCTGTTTGACCTTTGTCAAATGGTGCCACTTGTTGTGCTGCGCCAGGGCCAGAGCGTCCACCGCCCACTCTTTGGGCTCCTTCTTGATCTTGGCCCTGTCGTCGTCGTCCGTGTCGCTGGTGGCGTCGTGACCGTGGAACTCGGACGCACCGCAGTCGAGCTGCGTTTTCTCTCCGGATGTCGAGTTGGAAGATTTGCCGAAGCTGTAATTGTGGTCCTCCTTGGGGTCGCTGCTGACCAGTGGAGAGTCGCAGGACGGCTCGCTTTCGCTGCGAATCCTGCAGCCAGCCAGGACTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_003403471.2 lncRNA upstream 33943 27494923 ~ 27531363 (+) False LOC113533960
TU204017 lncRNA upstream 34529 27494902 ~ 27530777 (+) False LOC113533960
TU204018 lncRNA upstream 34529 27527675 ~ 27530777 (+) True LOC113533960
TU203994 lncRNA upstream 231426 27333404 ~ 27333880 (+) True G172352
TU203692 lncRNA upstream 591364 26973696 ~ 26973942 (+) True G172097
TU204062 lncRNA downstream 13079 27581718 ~ 27673480 (+) True G172414
TU204076 lncRNA downstream 53834 27622473 ~ 27652164 (+) True G172422
TU204056 lncRNA downstream 65293 27633932 ~ 27636361 (+) True G172408
TU204395 lncRNA downstream 225743 27794382 ~ 27799180 (+) True G172719
TU204396 lncRNA downstream 226117 27794756 ~ 27799180 (+) False G172719
XM_026926109.2 mRNA upstream 97740 27156343 ~ 27467566 (+) False nrxn3a
XM_034308069.1 mRNA downstream 158239 27726878 ~ 27760866 (+) True tdp1
XM_026926006.2 mRNA downstream 199629 27768268 ~ 27773076 (+) True kcnk13a
XM_034308269.1 mRNA downstream 212829 27781468 ~ 27793212 (+) True hmbox1a
XM_026926081.2 mRNA downstream 299601 27868240 ~ 27881903 (+) True pnoca
XM_026926664.2 mRNA downstream 345765 27914404 ~ 27927660 (+) True map7a
XR_003403449.2 other upstream 99657 27156343 ~ 27465649 (+) False nrxn3a
XR_003403450.2 other upstream 99657 27156343 ~ 27465649 (+) False nrxn3a
XR_003403451.2 other upstream 99657 27156343 ~ 27465649 (+) False nrxn3a
trnat-ugu_12 other upstream 649876 26915358 ~ 26915430 (+) True trnat-ugu_12
TU202966 other upstream 2247045 25315560 ~ 25318261 (+) False samd4a
trnak-uuu_7 other downstream 156568 27725207 ~ 27725279 (+) True trnak-uuu_7
TU205054 other downstream 1501081 29069720 ~ 29073089 (+) True G173221
TU205058 other downstream 1524852 29093491 ~ 29138776 (+) False nrde2

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00024874 False 7536 lncRNA 0.38 2 NC_007128.7 16733316 ~ 16741256 (-)
tiger barb (Puntius tetrazona) TU175146 True 3606 lncRNA 0.39 2 NC_056715.1 5039455 ~ 5043098 (-)