RNA id: TU204056


Basic Information

Item Value
RNA id TU204056
length 2326
lncRNA type inter_gene
GC content 0.42
exon number 2
gene id G172408
representative True

Chromosome Information

Item Value
chromosome id NC_047604.1
NCBI id CM018550.1
chromosome length 29376037
location 27633932 ~ 27636361 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TGTGAAATAGAGGTAAAATCTGGCACGGGTaacattatgaaatgaaaagccACTTTAGTGCTTAACCTTACCGTAATGTTCATCCAAAACTAGTGTGTATTCTATCCAGTATTAGTGTATAGATTTCCTCATCTCTAAGATATTATCGCTTCTACAGTTACTTTACACAGGAACTTGACATGACACTCACTCTatgtaatctaagactaataacacACAGATTAAAACGTTGTTTAACAAAGCAAGACTTTATCGTTTTCactgatatggtaaagttttctgtaaggagatgtttatttaacatttaagaaaggagtctccagtgtcagtgctttgtaacagtcagaggtaaagccgtaagttttctgacatcttcaggacagaagattttacgttttgtgttttctctgtaacatgacaagctgtgttttttttcgtcttattaacGTAAGACAGGGAATAAAGAGAGAGtggtgagggaacaaatgtttatagctgctgtaacgtaactgacaacaggaactaacttgttccacaacattaaatgttccataatattaaatgtaactataaacagattaaaaaagtatgaaatgtcattttttaattaataaccagagcaattgttggcaaattgctgtgttataagaagaatataacacttggggaTGTGTTATTCCTTTCTTATAGGAAGCTTAAGGTCAGGCAATATCAGCTAACACTCAGTGTTAAggattattaattaaaaaggcCACAGTTACGTTTGAGATATTGATGTTTGGGCTAGTGAGAACCAGTGCCTGGCTAATAAATTTGGAAAAGAAACTTGTGACTAATGAGCTACAGAGTTAATTTCATTCccagcaggttagcattttaaTCTACAGGACATGAAGAACTGAAGAACTGACCATGTGGATGCAGAAATTCTGGCCACGTCTCTGATCGTTTTAATAAGCTCTCTTAATCTTCGCTTGCTAACCTCTTAGACCTGCGCAAAGCTGTCGTGGATTAAGACGACAAGATCCAgaaatcacacagatacagtaAAGCAGATTATAGAGAGTGTTGCACCTCAGAACTGAGGGTTCATTACAGCTGAGACAAAGACATGATAAAGTCTGTAACCGCATGAATTTTCCCCTTAGACGTCATTAAGCTCCATTACAGCTCGTTTGTGCTGTTTGAGATGCAGGTTCTTATCCATGCTCTCTTCCCAGCTCTCTGTTGCCTAGGAGTAGAGGTGCAGGCTGGCTGCCGCGGCAACTGTGTCACCACGGTTACCCAGAGGCGCCCGGGCGTCCGTTTCCATAGCAACGACGGCGGCTGGGTCGGGGTGACAGGCTTCGTTAATTCTTTCGCCCGTGAACCCCAGGGGAGCTCCGCCATTTGTCCTCATTCCCACTGGTCTTTGACATCGTATTAAGAGTATTATTTTTGCACCGAGGTTTGAGTTATTACCCCCAatttttcccctcattctgCCATCATTTATCGAGGGTACATGGCATAAAGTGGTACAAATTGAAGAAAAACCTTCAGAGGAATGCCGTAATGGCTTTCTTGTGCCTGCAGATTTTCGGGTTTAATGCAAAATATTGTACATTTCTGTTTCTCGTCTCTCGCTGCGGCAGATAATCACATCCCTAAGGCTGAGAGCTGAGCTGCaaggtgaggtcacacactctataaaatAACACCTGACCTCTGCACGGCCTTTACCCGGTGTCCTTGTCCGCTCCAGGCACGCGATTACTGTCCAGCATTAACACGGTGTGTAAAGCCAGAGGCAGTGTGGACATAAGGGACGATGGAGATTTTGTGAGCTCGGCTTCAGTACATATGAAGTGGATGAGAGCGACGGCGCTGGTATGAAGGACATCGAGCAGATCGGTGTGTTGTGCGTGTTGTGTGTCGGTGTGTAATGAGTTTTACAGCACACTGCATGGCTTTATTATTCACTGCAGGATAATTGAGATTCTGTCTCGCTTATTGTGCTTTGGTCTGGATCAAGTGCTGGGTCAGCATCTTCAGCACAGAGACGCACTAAAGCCTAGAGCTGAGCTTCATGCtgcgctgttacaggaaaataatcaacgacggagtggtgtgatgaagcagagttactgataccataacaaacttatttatttttctataagagcatgcCCGGATgcattcctcttattccacagcaactCTCCAGCACAATtcgctgttttatttattaaggaacgACACATACCTAacctgaaactggagactccttccataaatgttaaataaacatctcctcacagaaaacttcaccatatcaacgattaca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU204053 lncRNA upstream 65293 27565306 ~ 27568639 (+) True G172405
XR_003403471.2 lncRNA upstream 102569 27494923 ~ 27531363 (+) False LOC113533960
TU204017 lncRNA upstream 103155 27494902 ~ 27530777 (+) False LOC113533960
TU204018 lncRNA upstream 103155 27527675 ~ 27530777 (+) True LOC113533960
TU203994 lncRNA upstream 300052 27333404 ~ 27333880 (+) True G172352
TU204395 lncRNA downstream 158021 27794382 ~ 27799180 (+) True G172719
TU204396 lncRNA downstream 158395 27794756 ~ 27799180 (+) False G172719
TU204439 lncRNA downstream 204625 27840986 ~ 27842183 (+) True G172741
TU204556 lncRNA downstream 391639 28028000 ~ 28071081 (+) False LOC113533782
TU204586 lncRNA downstream 465146 28101507 ~ 28108665 (+) True G172858
XM_026926109.2 mRNA upstream 166366 27156343 ~ 27467566 (+) False nrxn3a
XM_034308069.1 mRNA downstream 90517 27726878 ~ 27760866 (+) True tdp1
XM_026926006.2 mRNA downstream 131907 27768268 ~ 27773076 (+) True kcnk13a
XM_034308269.1 mRNA downstream 145107 27781468 ~ 27793212 (+) True hmbox1a
XM_026926081.2 mRNA downstream 231879 27868240 ~ 27881903 (+) True pnoca
XM_026926664.2 mRNA downstream 278043 27914404 ~ 27927660 (+) True map7a
XR_003403449.2 other upstream 168283 27156343 ~ 27465649 (+) False nrxn3a
XR_003403450.2 other upstream 168283 27156343 ~ 27465649 (+) False nrxn3a
XR_003403451.2 other upstream 168283 27156343 ~ 27465649 (+) False nrxn3a
trnat-ugu_12 other upstream 718502 26915358 ~ 26915430 (+) True trnat-ugu_12
TU202966 other upstream 2315671 25315560 ~ 25318261 (+) False samd4a
trnak-uuu_7 other downstream 88846 27725207 ~ 27725279 (+) True trnak-uuu_7
TU205054 other downstream 1433359 29069720 ~ 29073089 (+) True G173221
TU205058 other downstream 1457130 29093491 ~ 29138776 (+) False nrde2

Expression Profile