RNA id: TU204297


Basic Information

Item Value
RNA id TU204297
length 1995
lncRNA type sense_over
GC content 0.43
exon number 2
gene id G172635
representative True

Chromosome Information

Item Value
chromosome id NC_047604.1
NCBI id CM018550.1
chromosome length 29376037
location 27465872 ~ 27491804 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

tgtgtgtgtgtgtgtgtgtgtgtgtgtgcatgtgtgtgtgtgtgtgtgtgtgtgttttcatgacTTCAGAGTCTCTCTTCATGTTAAcgtcaattttttttcttcatgaagCACACGGAATAAGATGATCATGATGATCTCTCTGTACAATagaattactaaaaaaaatacaactcaAGTTCAATATGTACATTATCTACCTAAAAAGTACAACTGctatcatcatatcatcataatgtaataaaatatgtaaacaaacttttttttttgtcgtttgACACAGTCGACTGTGACAACAGATAGAATTCACACTTTTCACGTTAGATTTATTTTTCCGTATAGACATCCGTAACAGCGTTATAGTAGGAGTGCCAGTGCGCACCAGACAGCTTTTCAtaaaaaagagaacaagagGAAGTGGACCAACATACATCATGATCGCAAAAAAGATCAAAGCCGGCACCGGCCGCGCAGGAAACGTGACGTTCGTCAGCGTCGTTGTCACGTTgagaggggaggaaaaaaaaactaggaaAAGATGTGTCTGATGGATTGACTGGCCTGGCAGATCTGTTCAGCCTCAGCTGAACGTCATACATCGTAGTGTAAAGATGGCATGCATTACAATCAGTCGCTTTACTGAGACAAAGATAAAATGCACCACTTCGCTCAAattcacaaattattattattttttctcaaACGTCACAGTCGGTTGTAAAATCCGAATCATTTGGTCGAGTTTTGAATAACAGTGCTGCGAGAGTGTCAGTGAGCTGTCCTCGCTCGTCTGATTTCATTTACTACATTGATTTttcactcttcttttttttctctttttttgcagagagcaaaaaaaattgacaccacatataatgtataaacaatacaaatctttcatatgtatttatatatatattttttggcaAGAGTCCTTCTTTCTCattcacacaatatatatatatatatatgcatttatatatattttgtccATCTCTTATAACACTATGTGTCACTCACATGCTTGCAATGGCCGGAATAATTTTCTCcttgctctctcactctctctcactttttttctttttttttttttacaggataaaaaaaatgccaagGATCACATACCTTTTTAAAAGTCACTTTTTTTAGGATAATGATGTAGCTGTGAAGTATTCTACACTGATAACGCCGTTGACCGGATCGAAGAATAAAGGTCACTAATGTCGCTATTTACCATCGTGGTATGCTTACACAATAGTGTGCTTTATATTACAGTTGGTGTGTGAGCTCAGTGCCTCAGCACAGTGCCAAAatgaaaatctctctctctctctctctttctgtcagcgCAGCTCCTGATACGCCTCAGCGTCACCCGTTTCACTGTCGCGCAGTCTCACACGTAATATTCCTTGtccttgtttttctgtttcttgttGCTGCCTTTCGAGCCGTGCTGCTTGTCCTTCATGACCGCGCCGTTGCTCTGCGCTGAGTTGGTTATGTAATTGCGGCTCTCGTCCACTTGGTACGACCCCTCGTCCCTGTTTCTGTACTTATACATGGCGTACAGGAGGATGAGGATGCACAGAGCGGCAGCAGCAACTATCCCGACGACCATTCCAGTGGTGCTGCTAGATTCCCGGACGACCTCGGAGGCCCCGGGAACGCGCCTGACGCCCGGCTCCGTGGGGATCGCTGTGGGTACATTACGGAACATGGGGGAGGTTATTAACGGGCTCTTCGGCTTTTTGCGGTCTACGTCATAGGAAGTGGGCAATGGACGCAAGACTATGTCAGGTTGGGGTTTAAGCTCTCGGTTATTCATTTTGCCCGCAGGCCATTTGGGCGGCGCTGCGGCAGcagaggtggtggtggtggtggtggagcgGCTCGgcttggggaaaaaagatgCGGTAGTAGTCCTACCGTGCTCGGAGGCTTTGTTAGGTCTAAAGTCCTTGGCTTCCCACTTAGGCGCATGAGCTTTGTAGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU203838 lncRNA downstream 413838 26978466 ~ 27052034 (-) True G172225
TU203821 lncRNA downstream 506256 26894768 ~ 26959616 (-) True G172212
XR_004578992.1 lncRNA downstream 545335 26916818 ~ 26920537 (-) False LOC113534208
XR_003403481.2 lncRNA downstream 545335 26917086 ~ 26920537 (-) True LOC113534208
TU203819 lncRNA downstream 595253 26870347 ~ 26870619 (-) True G172211
TU204334 lncRNA upstream 73501 27565305 ~ 27566560 (-) False foxn3
TU204374 lncRNA upstream 232757 27724561 ~ 27725757 (-) False efcab11
XR_004578961.1 lncRNA upstream 272801 27764605 ~ 27768101 (-) True LOC117598276
TU204484 lncRNA upstream 295518 27787322 ~ 27787728 (-) True G172782
TU204486 lncRNA upstream 341728 27833532 ~ 27834840 (-) True G172784
XM_026926575.2 mRNA downstream 461910 26998431 ~ 27003962 (-) True alkbh1
XM_034308244.1 mRNA downstream 476252 26959823 ~ 26989620 (-) True sptlc2a
XM_026926758.2 mRNA downstream 510034 26929661 ~ 26955838 (-) True ism2a
XM_026926508.2 mRNA downstream 567564 26846846 ~ 26898308 (-) True ccdc85ca
XM_034308270.1 mRNA downstream 620737 26818900 ~ 26845135 (-) False setd3
XM_026926481.2 mRNA upstream 37059 27528863 ~ 27557994 (-) False ston2
XM_026926482.2 mRNA upstream 37059 27528863 ~ 27557005 (-) False ston2
XM_026926479.2 mRNA upstream 37059 27528863 ~ 27553284 (-) False ston2
XM_026926480.2 mRNA upstream 37059 27528863 ~ 27553284 (-) True ston2
XM_026926485.2 mRNA upstream 37059 27528863 ~ 27542924 (-) False ston2
TU203284 other downstream 1883345 25578939 ~ 25582527 (-) True G171734
TU203074 other downstream 2206510 25258839 ~ 25259362 (-) True G171569
TU203072 other downstream 2206663 25258839 ~ 25259209 (-) False G171569
TU202681 other downstream 2658777 24801083 ~ 24807095 (-) False G171256
TU201673 other downstream 4602105 22855494 ~ 22863767 (-) True G170435
TU204658 other upstream 407687 27899491 ~ 27910890 (-) True si:ch73-204p21.2
TU204659 other upstream 407687 27899491 ~ 27910890 (-) False si:ch73-204p21.2
TU204662 other upstream 420433 27912237 ~ 27912544 (-) True G172919
TU205159 other upstream 1345088 28836892 ~ 29050026 (-) True G173287
XR_004578919.1 other upstream 1409100 28900904 ~ 28908552 (-) False stmn4l

Expression Profile