RNA id: XM_026926209.2


Basic Information

Item Value
RNA id XM_026926209.2
length 621
RNA type mRNA
GC content 0.47
exon number 6
gene id efcab11
representative True

Chromosome Information

Item Value
chromosome id NC_047604.1
NCBI id CM018550.1
chromosome length 29376037
location 27671623 ~ 27725757 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TTTAAAACCTAacgttcatttttcttttttgacatAAACAGCTAGCAGGCGGTTTGTAACGTTAGAAAAATGTCTCTTCATAGCGGCGCTGCATTTTATAGGAAAGAGGATAGAAAAATGACAGCAGCTGAAAGGAAGAGGTTTGTTTCGGTTTTTGATCAGTGTGATGTGGAAAACAAGGACTATTTGTGCAGAGAGGATCTTAAAGTCGCAGTTGTGATGCTGTTCGGTTATAAACCTTCAAAGtcAGAAACAAGTATGATGATGGAGGCTGGCACTGTGCCAAACTGTCCAGGTATGATGAGCAGGTCGTGTCAGATTACAGggGTCCCTTTGGAGCAGTTTGTGTCTCTCATGGGGAGGAAGTTATCAGCAGGGGATCCATATGAGAAGACGAGACAGATCTTCAGCGCATTTGATCTACACTGCCGTGGATTCCTGAAGTTGGAGGACTTCAGAAGTGTGTTTGCGCGTGTGGCTCCTCGCCTGCCTGAGTGCACCGTGCTGGAGGCTTTTCGCCACGTGGACCACGACTCAGATGGACACATCAGCTTCAAGGACTTTGAGGACGTCATCGGTTACGGGCTGGCCAACAGCTGAGGCACTGTGGTAAAGCAGAAA

Function

GO:

id name namespace
GO:0046872 metal ion binding molecular_function

KEGG:

id description
K23853 EFCAB11; EF-hand calcium-binding domain-containing protein 11

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU204334 lncRNA downstream 105063 27565305 ~ 27566560 (-) False foxn3
TU204297 lncRNA downstream 179819 27465872 ~ 27491804 (-) True G172635
TU203838 lncRNA downstream 619589 26978466 ~ 27052034 (-) True G172225
XR_004578992.1 lncRNA downstream 751086 26916818 ~ 26920537 (-) False LOC113534208
XR_004578961.1 lncRNA upstream 38876 27764605 ~ 27768101 (-) True LOC117598276
TU204484 lncRNA upstream 61593 27787322 ~ 27787728 (-) True G172782
TU204486 lncRNA upstream 107803 27833532 ~ 27834840 (-) True G172784
TU204668 lncRNA upstream 208252 27933981 ~ 27936828 (-) True G172925
TU204645 lncRNA upstream 235240 27960969 ~ 28044248 (-) True G172903
XM_026926309.2 mRNA downstream 19322 27565258 ~ 27652301 (-) True foxn3
XM_026926311.2 mRNA downstream 19327 27565258 ~ 27652296 (-) False foxn3
XM_026926310.2 mRNA downstream 41190 27565258 ~ 27630433 (-) False foxn3
XM_026926480.2 mRNA downstream 118339 27528863 ~ 27553284 (-) True ston2
XM_034308293.1 mRNA upstream 68691 27794420 ~ 27842196 (-) False kif13ba
XM_034308294.1 mRNA upstream 68691 27794420 ~ 27842195 (-) False kif13ba
XM_034308292.1 mRNA upstream 68691 27794420 ~ 27842195 (-) True kif13ba
XM_034308367.1 mRNA upstream 157270 27882999 ~ 27892310 (-) True znf395a
XM_034307731.1 mRNA upstream 173753 27899482 ~ 27910847 (-) False si:ch73-204p21.2
TU203284 other downstream 2089096 25578939 ~ 25582527 (-) True G171734
TU203074 other downstream 2412261 25258839 ~ 25259362 (-) True G171569
TU203072 other downstream 2412414 25258839 ~ 25259209 (-) False G171569
TU202681 other downstream 2864528 24801083 ~ 24807095 (-) False G171256
TU201673 other downstream 4807856 22855494 ~ 22863767 (-) True G170435
TU204658 other upstream 173762 27899491 ~ 27910890 (-) True si:ch73-204p21.2
TU204659 other upstream 173762 27899491 ~ 27910890 (-) False si:ch73-204p21.2
TU204662 other upstream 186508 27912237 ~ 27912544 (-) True G172919
TU205159 other upstream 1111163 28836892 ~ 29050026 (-) True G173287
XR_004578919.1 other upstream 1175175 28900904 ~ 28908552 (-) False stmn4l

Expression Profile