RNA id: TU204396


Basic Information

Item Value
RNA id TU204396
length 4395
lncRNA type inter_gene
GC content 0.41
exon number 2
gene id G172719
representative False

Chromosome Information

Item Value
chromosome id NC_047604.1
NCBI id CM018550.1
chromosome length 29376037
location 27794382 ~ 27799180 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AGAGAGCACACAGAGGTGGGAGAAACCATTTTCAGGGGGTGGGGGGGTTAAATGAAGCACGGTTAGCCGTATCGGAGTCACCGAGCCCAGCTGGAACGGAGCTGAAAGGACACTTTGTGGTCGTTTTTATATTGAGTATTTAATATTGCTGTGGATCAGTGTCAGGTTTGAGGAATGGTACACGTCAGATATGAAAACGTACGAAAGATCAGCGCTCTGGCATCGTGAACAGGTTATGAAACGCGATAACAGGAAATCAACAACAAGTCAGTGATAATTGGTAAATTGCACTTTAACGTTAAATCCTGGCAAAATCTTCGAGTCAGTCAGTAAAACAGTAGCTGAAATGGTGGCCGGTTTTACACTGTACGATTTCAGCGCTCTTTAatcatcacactgtacaagaaaTAAATTCTATAACAGAGTGCATGATAAAgtgtcagattatacgatgaagatcctctaacaatAGACCTAAAGGAAATTACTACGTATGACGCTGCTTACGACAGTCAGTGTGATGCTCTCGTAAACACAAACGTTCTTCAAAACGTAAGCTTGAGGTAATGAGGATATTTTTccgtccattagcatgtttgttTCGACATCGCTACTACGATATTTGTAGCTGTCGGGTGAGTTTGCTGTCCTCCCATTGGTCGGTTTTAGACGAGTGTCGTAGCAGCGTATGaacttttagtaaaaaaaaattctcacacTGGCAAAACTTGGTCGTCGGCCATCTTTGGTTGCAGCGGCACCAAATTAACCGTGATATTGTGAACAtctcattatattttataagatCTCCGATCTCGACTcacgaccaaagaattcttttttttttaaacgagttTTATCTGCGAAATCATGACAAAAATCGTACAGTTTAAACCCGGCGATTCTTTATTATCTGATAAACATCTGTGAGGCTTCTCTGGCAACAACtcatcatcattacactcaACACCAGCCACATTTACAACACTGGATACAATAAAAGCATCAATGAAATCGTTTAGGACGTTAATGTGAGTTCCGTTAAATGCGTAATACTTATAAAAACAACCCCGGCgtagagcgaaagagagagagagaggaagagacagaaagagctCAGCACAAAAATGCTCTCCTTGTCTACGCAATAAACCGTAAAGAAATCGATGAGATCGCAATTTTATGAATGTACAAGTTTTGGAACTACAAATCACAACAGACATGCTCACAACGTTCATGCTACATGTACAAAACACACGATTAGACACCACTGTAACATCTTGAGGGGCGGGGCCAAGCAGACGGCTACTGATTAacgaagggggcggagcttagaCAAAAAGTTCTACAAGTTGCAACTGCAAATGTTTAAACTCGTGTAAAATGGAAACGTGTAAACACACAAAGTGAGTCAAGTACAAAGTAGATAtgcaagtattttttttttttttacgattttACAAAATCTGTATTTGCAATtcataaaattatgatttttatttattaaccagTGTCCTCTGTACTCATCTCACTGACTGATGTCTGCGCATGTCTGCCAATCCGATCAGACCAGCGCAATTCTGAGCTACCTGTGCGCAATTTTGCAAACATCTTCATGCACAAGGCACagatctgattaaaaaaatgatcaaagatACATTTCTGAGACAGTATTTTGAAGACTTGTGCAATGACAAGATGAAGAAGCTGTGTCtaatgaccacacacacacacacacacacacacacacttccactaaACTGTTCTATTAGTTAGAAGACTCTGGAGTTatcgaagaaaaataaaatcaggaaaataaatactACTTTAAGGAAGTCTTAAATGGGGACTGTTGTGAGTTAGAAAGATGATGGCTTTTTATTTCAGCACCGAGTCCTCGGTTAGATTTTAACCCTCTATAAAACAAGAAGAGACCCACTGGGTGGGCTGGTATCTAATCTAAAATCATATGTGCAATGTTTTAATTCAAAGGGATTCCTAAATTGaaaagttttataaaaaaattccacataGCTAtctataatcattaaaatatactttaataaaatcaatattgcaTTCGATTTAAGAAATCACATTAACGACTTtaaccctgcgttcacactaaCGAGCGACAACGTGAGATTTTAATCGAGATTTTCTCGCATTATACGCAAACGCCAAACGACTGGCTCAACGACTCCTCGGACCGACGTGTGGTCCGatgttcccatttactgtttgatgctCAAAAATGGACGAAAAACTTGCAACcctggtttcatcttatcctgtcgataaatgtgtatagagacgttacgaagaaaaataatgcTTGGAAGGAAGTTCCAGAGGTCGTTGGTgagtatgtagctagtacagctagctagtcagctaaTCTGTCATGCGAGCACGTAACGTGTAAATCAAACACCTAATTAGTGCGTTATTTTAagtagttagctttagaagccatatagctactactgtttctcgACACCGGACCGTGCGACAACATACAAGCGTCACGATCGACTTGTCGTGTGCTAATGTGAACGTAGGGTAAGGATTAAAATGCAATGGTATAACCCATCTTTCTGGTCTGCTCCCATGTGCAAGAACATCCGTTCGTGGTCCTTCATACTGAAGTATGTGCATCTCTGACTGCGTAATGATGCAAAACGTTTAATACTTTCTCTTGGAATGACTTTCGTTCCACTTATTCGCTTTACGCAAATGTATACAGTGTAGCCTTAGGCACTGCCAGGAATTGGTCCGTCCTCTTATCTTCTTACATTCCGTCTTCGCTAAATTCAAAGCTTCTCATGGAAGACTGAACTTTATGAATCACTAAAATGATCTCACTTGTGTCAATACctgacatttctgacatttcatCCAACAGTCACATGCTATAACTGGAGGAGGTTTATCCTCATGAATTCCAGTGCAACGGTAAAACCTCTTATCCCAGTTAGACTGATCCGTTCTCTTAAATCACTCAGATCTACATGCTACATGCTCTGAGGTATGTAGTGGCCTTCCCCCATATGAGCTACAGACTTTTATCCCAATGCAATTCCATCTTTTTCTTACTCTCCCAACATGCAATAAATACAGCACATGGCATTGAAAATGCAACTTCCTGTCTTCAGGCCTATTCATACTAAACACGATGCATCGTGAAAGCGTAAAAGAGTTGAAAATGATTTATTCCCAACACACTTGGCTCGATATGCATTTTCTGCGTTTGGGGGTCGGGGTAAAGCTCAGACAAATTACAGGGAGCCGATCCCTAGCAGCGTTGGCCCGTACgtttaattatataattggATTTATCTAATCTATTAGATTAGATGATCTATTGAAACAACATCGGAGCTAAAATAATGCCAAAGCCAGAACCTTGCGCTTGCTTTTCCCTCCAAAGCACTGATacgttttatttttaaaataagtatcATACAGCTCTAACACGAGCTGTCAACCTTTCAGTATGACGCTGATAAGATGAAATGATGTGAGTCGCCTTAAAATCATCCTAAAACTCCAGAAATTATGCTTTAAAAACTAGAATAGCtcggaaaaattaaaaaagagcgTCATCGCCATGCAGCATAAAATTCGTGTTTGGTGTGAACAGGCCTTCAAAATAACAAAcctaatattatatatacacactgtatgcaTAACCCACACTTTTGGCATCTTCTGATGCAGAACTTGCTTTCTCTTACATCAGACACAACCGTTATCTCTGACCAATCCCTGAGATCAGACCACGTGCTGACTGAAGGCTTTCTCGCTAGTGTTAAAGAGGAATAAGGGAtgactttacaaaaaaaacacctgaatcACAAAGGCACGTTTGGGATTCTCAGCACAGATTATTGACTAAAGGGGAGGAAGATTAATCATGCATAATCACGTAAAACATGAGTCTACAAAAAAGGACTCGAGAGAATCAGGGCAGGATAGAAACGACCGTTTGACCCCAGAGAACTGGGCTTCTCGTTATATTCGAGTTTCGACTCGCACAGTTTATTCAGTGTTGAGATGCGACTCGTTCCGTAAGCTGGTGTAGAGGTGAGAACGAGGGAACGGCGCAGCTCCTCCGTGTAGAACCGAGCACCAGGGTTATACAGCACAAGTGCATGGATTTGATTCTGTCCTCGTACAGGAAGGAACGGCGTTTAGTTGCTCCAGGATTTGCGGTTCTCtgctttctgattggtcaggccTGAATTCGGCTTAACCTGTAGGAACTCGCCGCTACGCCGGTTCTCCGAGTGCCGTCTGGACACGTCACGCCGACTCACTCGGTCCGGCCGCACGAGGACTCCGTAACCGGGGTTACAGCGGAAATACTGACGGCCCGCTACAGAGCCATCGTTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU204062 lncRNA upstream 121276 27581718 ~ 27673480 (+) True G172414
TU204076 lncRNA upstream 142592 27622473 ~ 27652164 (+) True G172422
TU204056 lncRNA upstream 158395 27633932 ~ 27636361 (+) True G172408
TU204053 lncRNA upstream 226117 27565306 ~ 27568639 (+) True G172405
XR_003403471.2 lncRNA upstream 263393 27494923 ~ 27531363 (+) False LOC113533960
TU204439 lncRNA downstream 41806 27840986 ~ 27842183 (+) True G172741
TU204556 lncRNA downstream 228820 28028000 ~ 28071081 (+) False LOC113533782
TU204586 lncRNA downstream 302327 28101507 ~ 28108665 (+) True G172858
TU204550 lncRNA downstream 319882 28119062 ~ 28122832 (+) True G172830
TU204603 lncRNA downstream 349397 28148577 ~ 28191912 (+) True G172873
XM_034308269.1 mRNA upstream 1544 27781468 ~ 27793212 (+) True hmbox1a
XM_026926006.2 mRNA upstream 21680 27768268 ~ 27773076 (+) True kcnk13a
XM_034308069.1 mRNA upstream 33890 27726878 ~ 27760866 (+) True tdp1
XM_026926110.2 mRNA upstream 327190 27352993 ~ 27467566 (+) False nrxn3a
XM_026926081.2 mRNA downstream 69060 27868240 ~ 27881903 (+) True pnoca
XM_026926664.2 mRNA downstream 115224 27914404 ~ 27927660 (+) True map7a
XM_026926112.2 mRNA downstream 131994 27931174 ~ 27963120 (+) True scaf8
XM_034307887.1 mRNA downstream 134758 27933938 ~ 27963120 (+) False scaf8
XM_034307879.1 mRNA downstream 163240 27962420 ~ 28056561 (+) False tiam2a
trnak-uuu_7 other upstream 69477 27725207 ~ 27725279 (+) True trnak-uuu_7
XR_003403449.2 other upstream 329107 27156343 ~ 27465649 (+) False nrxn3a
XR_003403450.2 other upstream 329107 27156343 ~ 27465649 (+) False nrxn3a
XR_003403451.2 other upstream 329107 27156343 ~ 27465649 (+) False nrxn3a
trnat-ugu_12 other upstream 879326 26915358 ~ 26915430 (+) True trnat-ugu_12
TU205054 other downstream 1270540 29069720 ~ 29073089 (+) True G173221
TU205058 other downstream 1294311 29093491 ~ 29138776 (+) False nrde2

Expression Profile