RNA id: TU204486


Basic Information

Item Value
RNA id TU204486
length 1281
lncRNA type intronic
GC content 0.43
exon number 2
gene id G172784
representative True

Chromosome Information

Item Value
chromosome id NC_047604.1
NCBI id CM018550.1
chromosome length 29376037
location 27833532 ~ 27834840 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

gtcagaaaacttagttacagctttgtctctgacactggagactccttccatacatgttaaataaacatcttaccaaaaaaaaaaaaaaaaaggtagccATATCAACGATTTAatccgttactatagaaacgataacggattagaacaagcacattaaaaatgataaacctgggatttgcagctgcactactgtaagagctgctgttctagaaaattcatcaacatcttctgaccaatcagagtccaggaTTCGACTGTTCGACTGTGTCTTAGCGCGTGTAAAGTGAGGGAAGTAGCTAATAATAAGAACTTTGTACGATGTTGGCTTTGTACCGATATCAGtaagatttgtgtgtgtgtgtgtgtgtgtaaaaccacGCAGAACTCTGCCGTGTGTCAGATCATAACTCTCCTCCGTCTGACTTCTCCCTATTTTCTTCAGCTCTCTGTCGCCGTGGCAACGCCGGGGGGGAGGTTAACCCCAGGTCACCCTCATGCCGAAGGACGGTTCTCCGCGTAAGGCAGGAGAACATAGAAGTTAGCTTTAGCATCTGTTGGCCATAAACGCGTGTTTTATGGCGGTAAACAAGAGAGCACCATTGCGGCTTTCTCTCGACGTAGCGCGCGGACAAAAGGAGCCGCTTTTAAACTTGGAGGTGAATAAAAGCGCCGCCTGCTGCCTTCACACAGCAGACAGTTTAATTGCAGAGCGGAGTTCATGTGCTGAATTTCTGGCGGTGTTAACGTCACACCAGATGCCTCCGATGGCGCGGTTCACACGGGCGCAACATGGCCGCTCGCACGTCCTGCACACTCCGATTCATATTCATTGTTCAGGTGGGCGTTAGACAGCATACGGCATCCCCCCGTCACGTCTCTCTTCCTTTTGTCACGGACGGGAATCCTTTCCACGACTTCGTGTGAACGTCTTCATCTCAGCATCTCAGGCCTCAGGCATCTCACGCCACTGACTCAGATGGGTCTTAGTGCCTGACACTTTTCACAAAATCCAGATCGTAGGAAGTAGATTTACGTCCGCAATTCGCACGACTGTGTTCATTTCAAccggctgtgtttgtgttgtagttaCTAATGGCGCAAAAATAATAAACGTGTATATATAGtaactttgtttttattataaataaataataaagtgcaaaaaaggGAAGCTAGAAATTTTGCCTATGAAACACACatgaatttatttctatttatttatttattttgtattcaattttcttttaattgtaTCTCAATATACAGTGATTCATATTTTTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU204484 lncRNA downstream 45804 27787322 ~ 27787728 (-) True G172782
XR_004578961.1 lncRNA downstream 65431 27764605 ~ 27768101 (-) True LOC117598276
TU204374 lncRNA downstream 107775 27724561 ~ 27725757 (-) False efcab11
TU204334 lncRNA downstream 266972 27565305 ~ 27566560 (-) False foxn3
TU204297 lncRNA downstream 341728 27465872 ~ 27491804 (-) True G172635
TU204668 lncRNA upstream 99141 27933981 ~ 27936828 (-) True G172925
TU204645 lncRNA upstream 126129 27960969 ~ 28044248 (-) True G172903
TU204715 lncRNA upstream 184388 28019228 ~ 28063603 (-) True G172965
TU204760 lncRNA upstream 295333 28130173 ~ 28135542 (-) True G172996
TU204777 lncRNA upstream 320459 28155299 ~ 28158417 (-) True G173012
XM_026926210.2 mRNA downstream 107803 27671623 ~ 27725729 (-) False efcab11
XM_026926209.2 mRNA downstream 107803 27671623 ~ 27725729 (-) True efcab11
XM_026926309.2 mRNA downstream 181231 27565258 ~ 27652301 (-) True foxn3
XM_034308367.1 mRNA upstream 48159 27882999 ~ 27892310 (-) True znf395a
XM_034307731.1 mRNA upstream 64642 27899482 ~ 27910847 (-) False si:ch73-204p21.2
XM_034307730.1 mRNA upstream 64642 27899482 ~ 27910846 (-) False si:ch73-204p21.2
XM_026926114.2 mRNA upstream 222722 28057562 ~ 28087407 (-) False tfb1m
XM_034307888.1 mRNA upstream 222722 28057562 ~ 28087407 (-) True tfb1m
TU203284 other downstream 2251005 25578939 ~ 25582527 (-) True G171734
TU203074 other downstream 2574170 25258839 ~ 25259362 (-) True G171569
TU203072 other downstream 2574323 25258839 ~ 25259209 (-) False G171569
TU202681 other downstream 3026437 24801083 ~ 24807095 (-) False G171256
TU201673 other downstream 4969765 22855494 ~ 22863767 (-) True G170435
TU204658 other upstream 64651 27899491 ~ 27910890 (-) True si:ch73-204p21.2
TU204659 other upstream 64651 27899491 ~ 27910890 (-) False si:ch73-204p21.2
TU204662 other upstream 77397 27912237 ~ 27912544 (-) True G172919
TU205159 other upstream 1002052 28836892 ~ 29050026 (-) True G173287
XR_004578919.1 other upstream 1066064 28900904 ~ 28908552 (-) False stmn4l

Expression Profile