RNA id: TU204586


Basic Information

Item Value
RNA id TU204586
length 1785
lncRNA type inter_gene
GC content 0.34
exon number 2
gene id G172858
representative True

Chromosome Information

Item Value
chromosome id NC_047604.1
NCBI id CM018550.1
chromosome length 29376037
location 28101507 ~ 28108665 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ttacagttaaaatggTCCCTGGCTAGACAGATAGATAGTTTATTAAttccagagggaaattcacactTCAGAAGTGTGTTTGAGAACCGCTGATCAAATTAATCTGTTTGTGCATTTGGTCACACTTTACAAGTAAATCATTTGAGACAGTTCTGGCAATTTATTGAGATAATATTATTACTCCTACAATGCCGTTGTTGTCCTTtgttgtttctctgtttctcttgttGTTTGTCTATTTCCCGTGTTGTTCATCTATATTTCTCTTGAAATCTCCATAAAAACTCTGAGAAGTTCCCTCTAGCAAAATCCAGGGACTGTAGTTAAATTATCCAATAAACAGCAGCAGAGACTTTACGAACTgtgtaaaagatttttattcatatttaagtGATGACAAGAATCAACAGTAAATCAGAAAATACCTTAAATTTATACAGTGTAAAGCACACTCTAAAGTGTTACACACACCACAATTACACAGTTAAACAAGACAAATGCTGCGTTATATCGAAAAACCAAAAACGGAGGAAAGAGATAACAGAACATTGACATATAAAACAACTGGCTGAAAAGACAACAGGTCAAATATGTTGACTAGccaattcttttaaaaaaattgtaatttcaTATAAGATAATAGataagataatataatataaggttTGGTTATCAGAATCCACTAATAAAATTTTCCTGTTAGCTAAACAAGAATGGTAGCTCTAGCTAAATTAGCTCGCTAGTATCTGGCTGGTTTTAAGTAATCTAGGTTTGGTCTTGTTACCCTTGAACAGAAAAGACaagaattagctagctaatctaATTACCAACTAAATTACATCAActccatttatttaaaagaaaaaaaacacgcaTACCAGAATTCAAGCAGGAGGAGTGTCAGTATTGTGTGGCTGTTcttagctatctagctagcttgTGCTAACTCGGTCTAACTAGCTGGTGTTAGAAATGGTGTACTCAAACTCTGTTAAATTTCTACATGTTTCTTTTCAagtatgaataataaaatcatttaagaCACTTAGCAATTAACTGAGAAGATGAATCAACTGGTCTGGCAGATTCAGAAGGCTATGATTGTGTCTCCTTTCATGCAAATGAGGCAAAGAACATGCGCACAATGCTCCATCCTCACaactatatagaaatataaatgcaaacacacacacagtatattctCCCTGGAGGATAATGTTGGGATACATACTTCAAGTTCAAATTTACTTCTTCAtagtgagaaaagagaaaataattgtTACAAATGAAATTATTTCTCTACCGAAAAGGTTTATTAACTCTAAACTCTTGGTTTATTAtacacttttttccctttttaataGACATGCACAATATTCTCCACATAACCCTAAAGggatattaacatttatgatcATTACTCATGTAGTGATATGTGTTTTCCAAGACAAACATGAgaaaaaggatttttaaaacaatatcttTCACTCTGGACCTTTCATACACTACTGATTTTGTGAAGTGAAAATTTACACATGAGAGATGATCAGTGGTGCTGAGTTTTCACCTCCATCATTTTGCACAAGGACTGAAATATGGATAGAGTTTCTCAGTGAAAGACTGACCAGTGAAAGAGTAGATATGAGACCTGGCTTCAACATCATAAAAGGAGACCAGACCCTCCTCATAATCCACAAACACTCCCACCTTCTGGGGTTTCTCTCTCAGGGAGAGGGAGATACAGGAATCATCACAAGCCTTATACTGATTCCCATTCCTCAGAGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU204556 lncRNA upstream 30426 28028000 ~ 28071081 (+) False LOC113533782
TU204439 lncRNA upstream 259324 27840986 ~ 27842183 (+) True G172741
TU204395 lncRNA upstream 302327 27794382 ~ 27799180 (+) True G172719
TU204396 lncRNA upstream 302327 27794756 ~ 27799180 (+) False G172719
TU204076 lncRNA upstream 449343 27622473 ~ 27652164 (+) True G172422
TU204550 lncRNA downstream 10397 28119062 ~ 28122832 (+) True G172830
TU204603 lncRNA downstream 39912 28148577 ~ 28191912 (+) True G172873
XR_003403478.2 lncRNA downstream 128008 28236673 ~ 28244726 (+) False LOC113534053
XR_004578977.1 lncRNA downstream 128008 28236673 ~ 28243954 (+) True LOC113534053
XR_004579037.1 lncRNA downstream 280531 28389196 ~ 28435398 (+) True LOC117598375
XM_026926115.2 mRNA upstream 31804 28060576 ~ 28069703 (+) True LOC113533782
XM_026926116.2 mRNA upstream 31804 28066519 ~ 28069703 (+) False LOC113533782
XM_034307879.1 mRNA upstream 44946 27962420 ~ 28056561 (+) False tiam2a
XM_034307878.1 mRNA upstream 44946 27979403 ~ 28056561 (+) True tiam2a
XM_034307884.1 mRNA upstream 44946 27979403 ~ 28056561 (+) False tiam2a
XM_034307898.1 mRNA downstream 14338 28123003 ~ 28127853 (+) True ptp4a2a
XM_026926376.2 mRNA downstream 20054 28128719 ~ 28165654 (+) False ppp1r13ba
XM_026926374.2 mRNA downstream 26632 28135297 ~ 28165654 (+) True ppp1r13ba
XM_026926375.2 mRNA downstream 26633 28135298 ~ 28165654 (+) False ppp1r13ba
XM_026926050.2 mRNA downstream 57488 28166153 ~ 28170563 (+) True sdsl
trnak-uuu_7 other upstream 376228 27725207 ~ 27725279 (+) True trnak-uuu_7
XR_003403449.2 other upstream 635858 27156343 ~ 27465649 (+) False nrxn3a
XR_003403450.2 other upstream 635858 27156343 ~ 27465649 (+) False nrxn3a
XR_003403451.2 other upstream 635858 27156343 ~ 27465649 (+) False nrxn3a
trnat-ugu_12 other upstream 1186077 26915358 ~ 26915430 (+) True trnat-ugu_12
TU205054 other downstream 961055 29069720 ~ 29073089 (+) True G173221
TU205058 other downstream 984826 29093491 ~ 29138776 (+) False nrde2

Expression Profile