RNA id: TU204658


Basic Information

Item Value
RNA id TU204658
length 2737
RNA type TUCP
GC content 0.41
exon number 7
gene id si:ch73-204p21.2
representative True

Chromosome Information

Item Value
chromosome id NC_047604.1
NCBI id CM018550.1
chromosome length 29376037
location 27899482 ~ 27910890 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

agagagagagagagaatgaggaagtGAGGCTTTTCAGTAAGGTGTATATCACCtgtctgtgacacacacactcacacacacactcacacacactcacacagacaggaGACGGGGCTGAGCCTCTTGTTAAACCGTAGTGCtatgcaggacacacacatggagaaGGAGCTCTGCTTGTGAACTAAGAAAGGTCAAGAGGTCAAGAAGGAAATCTTCATCAGCAAAGCGGCGACGGTTTCAGCAAGAACAGAACCAGGATCATGGCACCCATCATCATCGTTGACCTGCAGGCGTGGGAGGCAGCGAATCTCGCGGGGCTGGCGTTCCTCTCCGTGgtcatcctcttcatcctctccaTCACACTCCTCGCTCTCTGTACGAGCTGTCAGAGACAGTCGTTTACTCTGGATAACAGCGGTACAGTGGAGAGGAGCACATCCACACTGGTTCGAGTTGTGAATCAGGGAAATGCCGCAGAGAACCCCGCTCCTGAAAGGAATCCCACCGTGTTGCCCGAGGACCTCCAGCTCGGCCCCAATCAGCAGTTCAAACACTGGAGGAGTCACACACTAGAACGCAACCCACAGACGACGGAGAATGGAGGCAAGGCGACTCTGTAGGAAGTTTGACGATGAGTATGCACGCTAAACACTTCTATCTCCGGAACGGCATCATCGCGCTCAGGATTTAACCACATCTGTCATGGAATTGAGTCTCAcactgtgtgtacacacactgaaaatgctTATCCTTAAAAACTGACAAAACCTCTCAGAAGAGACATTAATAACACCTCCTACGTCTTGCTGTTACCATACCACGACTTAGCACATCTACAAAACTGTTGGAGAGAAGAAAGTTCCAGAAATCTTCATGAAAGGAGCTTGAAATGAATCTGTGTTTTACATCATGACCCTCTGTGCACTGGGCCAAACCTTCAGGTTAGCACAGGAACCGGATGATTGATCTTGGTGGTACTGATATTAACATCACAAGCATGAGTAAGAACATCAAGAGTTCTAGCACACCACAGGAGTCAGAGGAACCTGCTCTACCTTTGCCTGAAATAACATAAAGAACTGACACTTCAAATTCAAAAGCCTACCCTTAGGGAACCATCACTGCAcactcttccaaaaaaaaaaaaggtcctcAAATGTTCTAGTTTTCTAAAGGGATTCGacatgaaaccttttttttttgtctgaaggGAAAACCGTGTATTAATGGTTCCTCGAACGAGACAAACCCGTTAGGGTTCTCACTGAAAGGGTTTTAGACTGGGATAAGAACGttcagagtgtgtgagatttatCTCCACAGCCAATTTCATGGAAGTGCACTGATCAACAtctgtatttaatttctaaaacaATAATATGTTTAAAGTAATATCTAAACCAGCTATCTGTATGAGGTGTAGGTCACTTTATCTTGCTAACGTATGAGGTTTCAAATATTATAAAACTGTATGTGGATTTCCAAATTTACCATTGGTGCTGGGGAATCTGAAATTTCTAAAATGAAGTCTACACGAAGTTTATGTGGAATTCAGGGCACTAAAACCAAAGTATTTCTAGAGTTCTCCCATATCTAACAGTATACTATATTGTGCATTTAACTCCTATTATTAACCTAAATAGAAGTGATTAACAACTATTAACAATTAACCGGGTTAATTAAACAGGTGAAAATTAAATAGTAGCTTTGGTAAAGTTACTTGGTAAATTATTTCCCACTTTAAGAGAAGCTAGGATCAGTTTAACGGTCTGTATGAAACCAAAACTGAGCTATGTAAAAGAAACTTTCCAGCTCACACTACGGACTGTCTGTACAAACACGtcacactgggcctcatttatcagtcatGTTATGAGTAATTTTTTTCGTAGGCCAAACAGAACCAAAAATTCCCACCAGATGTACAAAAGATTCCCTGATTTTCTTCAAATTCACGTGCGTATGTTGATGAATGGCAATCAGCTGAAAATTACCAAGTGCTGATTTATATTTAGCCATGCTCACAATACGCCgtaaaggcaaagctcacagagagctgaaaatgacaaaatggcgaCTGAACGCTAAAtattccagtaatgcagctcagccactgcagcgcatcTCTCTAAACACAtgctaactcttcctccttttatagggtgccattacttgtGTCCTAATGGAATGTGTAGTCttatttatgttcatttatggatttattttgcactgttttcAGTTCTTTAAAGCTATTCatatgaaatgactgagttTCACAGAACGTTCATTAAACTGGTGTGTAATTGACgtaaataagcaatttaaacttgaccAGCGTAATCTgtttataaaatcacagtaactcGTCGTTAATTCTACGATTTGAAGCCGATCAGTGGAGGTTCAGATTACTGAGTGTCCTTatttacacactcaggagctaaactaactggattttcatgaacaccacaTTTCTAGTGTAAATACTCTGCAAACAATTGTGAGTAAAGCCGTTCGTATTCAGcgtgataaatgaggcccactgtgaGCCATCATCAGTTAATCAGTAATCACCTGCAGCGGTGCTTCACGAATAGGGTGTGAGCCGTTATATAACCAAGGACgtggtgtgtatctgtgtgactgaaaatatgcaaatagtTAACTCCTTGTAATCTCTTTTCTTTTAAGCCATTTTATATGTACGCAACACACGAtgttgtgaaaataaatgaga

Function

GO: NA

KEGG:

id description
ko00512 Mucin type O-glycan biosynthesis

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU204486 lncRNA downstream 64651 27833532 ~ 27834840 (-) True G172784
TU204484 lncRNA downstream 111763 27787322 ~ 27787728 (-) True G172782
XR_004578961.1 lncRNA downstream 131390 27764605 ~ 27768101 (-) True LOC117598276
TU204374 lncRNA downstream 173734 27724561 ~ 27725757 (-) False efcab11
TU204334 lncRNA downstream 332931 27565305 ~ 27566560 (-) False foxn3
TU204668 lncRNA upstream 23091 27933981 ~ 27936828 (-) True G172925
TU204645 lncRNA upstream 50079 27960969 ~ 28044248 (-) True G172903
TU204715 lncRNA upstream 108338 28019228 ~ 28063603 (-) True G172965
TU204760 lncRNA upstream 219283 28130173 ~ 28135542 (-) True G172996
TU204777 lncRNA upstream 244409 28155299 ~ 28158417 (-) True G173012
XM_034308367.1 mRNA downstream 7181 27882999 ~ 27892310 (-) True znf395a
XM_034308293.1 mRNA downstream 57295 27794420 ~ 27842196 (-) False kif13ba
XM_034308294.1 mRNA downstream 57296 27794420 ~ 27842195 (-) False kif13ba
XM_034308292.1 mRNA downstream 57296 27794420 ~ 27842195 (-) True kif13ba
XM_026926210.2 mRNA downstream 173762 27671623 ~ 27725729 (-) False efcab11
XM_026926114.2 mRNA upstream 146672 28057562 ~ 28087407 (-) False tfb1m
XM_034307888.1 mRNA upstream 146672 28057562 ~ 28087407 (-) True tfb1m
XM_034307957.1 mRNA upstream 184907 28095797 ~ 28106204 (-) False LOC113533853
XM_026926266.2 mRNA upstream 184907 28095797 ~ 28100883 (-) True LOC113533853
XM_034307958.1 mRNA upstream 190991 28101881 ~ 28105767 (-) True LOC117598250
TU203284 other downstream 2316964 25578939 ~ 25582527 (-) True G171734
TU203074 other downstream 2640129 25258839 ~ 25259362 (-) True G171569
TU203072 other downstream 2640282 25258839 ~ 25259209 (-) False G171569
TU202681 other downstream 3092396 24801083 ~ 24807095 (-) False G171256
TU201673 other downstream 5035724 22855494 ~ 22863767 (-) True G170435
TU204662 other upstream 1347 27912237 ~ 27912544 (-) True G172919
TU205159 other upstream 926002 28836892 ~ 29050026 (-) True G173287
XR_004578919.1 other upstream 990014 28900904 ~ 28908552 (-) False stmn4l
XR_004578918.1 other upstream 990014 28900904 ~ 28908552 (-) False stmn4l
XR_004578917.1 other upstream 990014 28900904 ~ 28908552 (-) False stmn4l

Expression Profile