RNA id: TU204668


Basic Information

Item Value
RNA id TU204668
length 2828
lncRNA type inter_gene
GC content 0.38
exon number 2
gene id G172925
representative True

Chromosome Information

Item Value
chromosome id NC_047604.1
NCBI id CM018550.1
chromosome length 29376037
location 27933981 ~ 27936828 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ctgatgttcaacaaggacatatgggtgtgatggtcaggggtgcacatacttttggccatatagtgtaatatatcCATTCGAGATACACTGAGCGTTAATCAGATGTCACCTGAAACACCAGGTGTCATATATTCAGCACTTCCGTTATCTGCTCCACTGCTGTTATCTGTTCACACGTCCAGCCTGTAAAAACCGCATGTTATCTGTGACGCTTTCGGACACTGTGAAGATCAGTCATCAGCATCACACAACAAACGTCTGCTGCTGGAATTACACGAGGCCCTGAATGCGCTTAATCGCTATCCGGCGTCAGTCAACACGGAGCAAACCGCTGGGACAGTTCCAGCCGTTCCTGCCTGCACgtttgaggaataaaacatcattaCGTCATTATGACCTACACACTAAGATATCAGAGGTACCAGAAATACACCGAGGCACAGCGAGTACCCGCGCAGTTCCCACGCATTttactaaaaatattaaattactttttCCATAACATCTAATGAAATTCCCATCAGATTGGATTAAATTCCCAGGACTGTTTTTTCCCGATTCCTCGGTCCCTCATCCTGCGTTTAATACACGTCCTTTAAACCAACTCCtgcacacttctctctcttcttcttctttttttaaaatattaaaccaaaactcattattgtacagtgtgataaagctaaaactaatttaaaaaaatccttcatTTATCTTTTCCAAACACTTTCCAGGATGTTAAGGACTGCAGGAACCCTGAAgtacttcacaaaaaaaatatgaatatggaTGCTATAATAGCGATAATGTGGTAAAAGGATCAATCCACGTTTCTGAGACGTCCCTGGTATCATCtgtaggtttatttattttatttttattttttttaattacaacttAACAGTTTTGTTAGGATCCATTTAAAacttttcaaatcatttttgctTGGtttttcaaagattttttttttgcaaagatcTCTCTTCAAGTATTGCGATGTGATATCTctatgaaagaagaaaaaaaaaaaaaaaaaaaacgctcagTTCCTTCAATATTATAAAACGCAAAGCCGTGATTATTGACGCATTTATCACGTTTACAAGCTGGAGGATTTAAAACGTACGCAACGAAGCAATTCATCAGACGATCTGATCATATGTTTCATTCCCATCTAACAGAACATCTGGATGCTGAAACGCTTGCACTTTTCACTCGCGTTTATTAATTAGGAAGACGGTTTTCACGCAAGCGAAAGAATTACAATCCAAGCAATTAAGGATTTCACCTCATAACCTTCTGAACACTGGATCAGAGCTTTAACAGCCAGAACTAACATCACAGCTGccgaccaatcagaagcgaGAATGCAAGACCACCTCATTTTCAGGTCCCAccattaaaataacaacagcAGCCGTCCTTTcgttctttaaaagaaaaactcctCCCTGAACGGCttcaatatttataattcataGTAAAATCCTCCTGTGACGTCAAAACAACACGACCGCCATCTTCTCgctggaatttattttaatttatttgtgttttgagTGGACTTGTGCTTAAACATGGCGTCTGGTTCCACAGAAACGCTTCCAGAAGTTAGTTCTTTAGACACCGAATTACTGAATTAGATTTTaacagaaaaactttttttaaaagtgtgacaTTACAACAAACTCCAGTTGTGCAGGTGAGTTCAGCATTCCACCTACACACCTGATCacctaattaactaattaacacTTCGCTAATTGATCAGGTAATCTGTACGCgttcttcttttctttataaAGCCGATATTTTAACTTCTACGGTTCGTCTCAAATGCCTGAAGTTCTAACAAAACATCTGGTTACAGAATCAACCAACAAACTACATACtgaattatttctaaaaaaagatttttttaaatgaaagttacataaaatatctaaataaaatgttttcccTCTGGGTTCTACTTCAACCTGTACATCACTTGATTTTACGGAGTTGGTAAacatcatttacaaaaaaaactacaaaaatacaggctaatttttaaaagatttgtaTTAAAGTTATTATGGTATAAACGTAAAGGTGCAAGTGTAGCAGCTACGCGTCGTTTAAACGCTCGCTCgctttttaataaagttgttgtggtataaagtaGCTTACGTCcgtctggaggattaaaagcggCTTCCACTAGAcggcacatcagagccaaaacatctttCCACCTGCTTCCCAACTCGAACTGTAACGTTCAGCAGTTTCATGCACAGCGACGTTAAACATAAAGACGAGCTtcgtttctctttaaaactccCTTCAgtcgtcgtgattgttgtcatgatccgCGTCTCAAATCAGGAATCAGGACTCAAAACGGAGCTTTCAGTAGATTTAAGAGGGTTTTAATATTCGAACAGTAAGCGTAATTGGAAAAACGTTTGTGTTTATACTCAGTAACGATCCAGAGGAGAGCGTTAGTTTGTTTATACACgctgaataatatttttacttttcgAAGCTTCCTACAAAACGCCTGAACCGCCAATTTATCTTACTCTCTAAAGACCAAAGGTTCTATTTCACGCACAACCCGCGTAATAAGGAAATTTGTGGTTGCAGAAATCTGGAATGAGAAGGAAATAAATCAGTGAGAGAGTACTAATTTACGTTTTTTTACtaaatctgttatttttatCAGTGCGCTACGCAGCAGGATGCTGAGAGGAAATCGCAAACCCCGCTTTAATTCCCACTTGCATTGATCTAAATACTTACCTTTATCGCTTTAATGGCTGACTTGGTGATCTGGGTCATCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU204486 lncRNA downstream 99141 27833532 ~ 27834840 (-) True G172784
TU204484 lncRNA downstream 146253 27787322 ~ 27787728 (-) True G172782
XR_004578961.1 lncRNA downstream 165880 27764605 ~ 27768101 (-) True LOC117598276
TU204374 lncRNA downstream 208224 27724561 ~ 27725757 (-) False efcab11
TU204334 lncRNA downstream 367421 27565305 ~ 27566560 (-) False foxn3
TU204645 lncRNA upstream 24141 27960969 ~ 28044248 (-) True G172903
TU204715 lncRNA upstream 82400 28019228 ~ 28063603 (-) True G172965
TU204760 lncRNA upstream 193345 28130173 ~ 28135542 (-) True G172996
TU204777 lncRNA upstream 218471 28155299 ~ 28158417 (-) True G173012
TU204790 lncRNA upstream 233446 28170274 ~ 28170878 (-) True G173020
XM_034307731.1 mRNA downstream 23134 27899482 ~ 27910847 (-) False si:ch73-204p21.2
XM_034307730.1 mRNA downstream 23135 27899482 ~ 27910846 (-) False si:ch73-204p21.2
XM_034308367.1 mRNA downstream 41671 27882999 ~ 27892310 (-) True znf395a
XM_034308293.1 mRNA downstream 91785 27794420 ~ 27842196 (-) False kif13ba
XM_034308294.1 mRNA downstream 91786 27794420 ~ 27842195 (-) False kif13ba
XM_026926114.2 mRNA upstream 120734 28057562 ~ 28087407 (-) False tfb1m
XM_034307888.1 mRNA upstream 120734 28057562 ~ 28087407 (-) True tfb1m
XM_034307957.1 mRNA upstream 158969 28095797 ~ 28106204 (-) False LOC113533853
XM_026926266.2 mRNA upstream 158969 28095797 ~ 28100883 (-) True LOC113533853
XM_034307958.1 mRNA upstream 165053 28101881 ~ 28105767 (-) True LOC117598250
TU204662 other downstream 21437 27912237 ~ 27912544 (-) True G172919
TU204658 other downstream 23091 27899491 ~ 27910890 (-) True si:ch73-204p21.2
TU204659 other downstream 23091 27899491 ~ 27910890 (-) False si:ch73-204p21.2
TU203284 other downstream 2351454 25578939 ~ 25582527 (-) True G171734
TU203074 other downstream 2674619 25258839 ~ 25259362 (-) True G171569
TU205159 other upstream 900064 28836892 ~ 29050026 (-) True G173287
XR_004578919.1 other upstream 964076 28900904 ~ 28908552 (-) False stmn4l
XR_004578918.1 other upstream 964076 28900904 ~ 28908552 (-) False stmn4l
XR_004578917.1 other upstream 964076 28900904 ~ 28908552 (-) False stmn4l
XR_004578916.1 other upstream 964076 28900904 ~ 28908552 (-) True stmn4l

Expression Profile