RNA id: TU204884


Basic Information

Item Value
RNA id TU204884
length 233
lncRNA type inter_gene
GC content 0.33
exon number 1
gene id G173106
representative True

Chromosome Information

Item Value
chromosome id NC_047604.1
NCBI id CM018550.1
chromosome length 29376037
location 28531459 ~ 28531691 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CTACTAGCGCTTAtcagttagctaacatgatttctgagaggaattttaaaTCTTATTCGTAATTTTTACAATCTTCACCGCTAATGTGATCTCTACTAGCGCTAAtcagttagctaacatgatttctgagaggaattttaaaCCTTATTCGTAATATTTACAATCTTCACCGCTAATGTGATCTCTACTAGCGCTTAtcagttagctaacatgatttctgagaggaattttaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_004579037.1 lncRNA upstream 96061 28389196 ~ 28435398 (+) True LOC117598375
XR_003403478.2 lncRNA upstream 286733 28236673 ~ 28244726 (+) False LOC113534053
XR_004578977.1 lncRNA upstream 287505 28236673 ~ 28243954 (+) True LOC113534053
TU204603 lncRNA upstream 339547 28148577 ~ 28191912 (+) True G172873
TU204550 lncRNA upstream 408627 28119062 ~ 28122832 (+) True G172830
TU204932 lncRNA downstream 238334 28770025 ~ 28772065 (+) True G173140
TU204941 lncRNA downstream 266476 28798167 ~ 28807149 (+) True G173143
TU204959 lncRNA downstream 288809 28820500 ~ 28825365 (+) True G173154
TU204961 lncRNA downstream 300655 28832346 ~ 28864098 (+) True G173156
TU204956 lncRNA downstream 329792 28861483 ~ 28935700 (+) False brms1la
XM_034308247.1 mRNA upstream 54214 28441002 ~ 28477245 (+) True LOC117598320
XM_034308145.1 mRNA upstream 305805 28217692 ~ 28225654 (+) True jkamp
XM_026926569.2 mRNA upstream 322597 28181100 ~ 28208862 (+) True daam1a
XM_034308120.1 mRNA upstream 322597 28194270 ~ 28208862 (+) False daam1a
XM_026926050.2 mRNA upstream 360896 28166153 ~ 28170563 (+) True sdsl
XM_034308125.1 mRNA downstream 163287 28694978 ~ 28716687 (+) True ctage5
XM_034308126.1 mRNA downstream 163287 28694978 ~ 28716687 (+) False ctage5
XM_026926500.2 mRNA downstream 166953 28698644 ~ 28716687 (+) False ctage5
XM_034307928.1 mRNA downstream 198738 28730429 ~ 28735890 (+) True fam177a1
XM_034307929.1 mRNA downstream 198738 28730429 ~ 28735890 (+) False fam177a1
trnak-uuu_7 other upstream 806180 27725207 ~ 27725279 (+) True trnak-uuu_7
XR_003403449.2 other upstream 1065810 27156343 ~ 27465649 (+) False nrxn3a
XR_003403450.2 other upstream 1065810 27156343 ~ 27465649 (+) False nrxn3a
XR_003403451.2 other upstream 1065810 27156343 ~ 27465649 (+) False nrxn3a
trnat-ugu_12 other upstream 1616029 26915358 ~ 26915430 (+) True trnat-ugu_12
TU205054 other downstream 538029 29069720 ~ 29073089 (+) True G173221
TU205058 other downstream 561800 29093491 ~ 29138776 (+) False nrde2

Expression Profile