RNA id: TU204932


Basic Information

Item Value
RNA id TU204932
length 2018
lncRNA type inter_gene
GC content 0.46
exon number 2
gene id G173140
representative True

Chromosome Information

Item Value
chromosome id NC_047604.1
NCBI id CM018550.1
chromosome length 29376037
location 28770025 ~ 28772065 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AGGATGAAGCTCACCGCTGTAGTTGGGCATCTGCAGGATGGACGGCAGATACTCCAAGCCGCTTTGCGTGAGGAGACCGAAACACGTGAGCGATCCCGTCCTGCAGGCGATGTGCAGAGCCGTGTTGCCGTTGTTGTCCACCAGCATGGGGTCGCAGCCGGCTTTCAGCAGACGCTCCACCACCAGAGGCTGCTCTGTGATCACAGCCAAGTGCAGCGCCGTCTGCGGAAAGATCCGGATCTTAACGCATTTCCTTCAattttagcacaaaaaaaaaacagctgagcCTGTTTAGAGTGTTGTACCTGTCTCTGGTAGTTCTGTTTGTTCAGGAACGGGTGCCTGACGGACATTTCGATCATTTTCAGTGCCATGTCTTGGGCCTCATGAATGATAGCCAGATGCAAATAcctgtgagaaagaaaaaaggaacaatTAGTGACGGTAAAAATGGAATTTAATGTTAAACGCTCGCTGTGCTGCACACGGCTCACTGGGGAAAAACAagcagtgacttttttttctctctgcaggcAGTGGTGTTTTTCCTAGAAGGGCCTTACTGGCAGACAGCCCGGgactttccacacacacacacttatgcaagcgcgcgcacacacacacacacacacacacacacgcactgagCCAAAGTACAAAACACTGTATAGTGAACAATCCTTCCTGCAGAGCAAGAACTAAACCTAAACAcataacatgcatttatttcatATCTATTACATGATATTTGCTTTCTGTATTATTAACAGCTTCAGCCTGCTAATTACTGCAATCAgcacaaataaacagattaaacactgCTGCACACCAAAAACAAACCCTCTGCACTGCATTAACACTTAGTGTGCACTCAGACATGCTGAATGAACAACTACACTCTGTATTTAACCCTTAAATTTAACCCTTCCAGTATTTAACACTTACACTTTCTTCTTAACACTTACACTGTATTTAACACTTACACTCTGTACTTAACACTTACACTGTATTTAACACTTACACTCTGTACTTAACACTTACACTGTATTTAACACTTACACTCTGTACTTAACACTTACAGTATTTAACACTTAACACATGCTGTATTTAACCCTTAACACATGCAATATTTAACACGTAACACATGCAGTATTTAACCCTTACACTCTTTGCCCTGACCGACCTGCATGTTTTCTTTAGGTGTTTAATTCAATACTAAGGATTTAGTTCcactctaactgcacattttgTGTTCATCTGTTGTGTCTGAACACACTGGAGTGTTTATTCACTGACATGctctttattaaacattaaatactgaaataaagcCTAGTGTTGAATCCGTGACTGTGTTTTTTCTCGGATTGGATTTAAGGTGCAGCTTTTCTGAGCGCGAGATTACACTCCTGGCTGCACACATGCAGTGTTTCATTAGCGCTTAAAGGTTTTAAATGAACACTTCTGACGCTGAATAAACTCCTACACTCACGCAAACACCGCGTGTAGGTGTAAACTCCACGCTTTCACGCGCTCTAATCAACACCGTGAGCTTTAATTCCACACCTGAGGTGTTTATTCCGCTGTGCGCGCGCACGGTGTCGGTGTAGCGTTAATCCCTGAGCAGCACACACTCTGACCGGGTGTTAAAGtgcacaaaaaatattaaatgtataagtAAAGGGTCACCACGCACGTGTCTCCGTCTTCCGTGATCTCGGTCCTCCAGCGCTCCTCGTGCGCTCCGTCTACACTCAGCCTCGCGAACTCGGCGGTCACGGGCCCCTCGCGCGCGCTGCAGTAATCCTCCGTGTCGTCCTCGCGCAGGGAGTCCAGCCCGCTGTCCAGGCGCTCGTCTATCACCGTCCCCGCTTTGTGCGCGCGCCCTTCCGAACCGTAATCCATCGGGCTCGTGCTGGTGATGTTCCGATAAAGAGCCGTGttaatagagtgtgtgtgagagagagtgtgtgtgtatgtgtgtgtgtatgtgtgaagtgaagtgtgagCTGATCTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU204884 lncRNA upstream 238334 28531459 ~ 28531691 (+) True G173106
XR_004579037.1 lncRNA upstream 334627 28389196 ~ 28435398 (+) True LOC117598375
XR_003403478.2 lncRNA upstream 525299 28236673 ~ 28244726 (+) False LOC113534053
XR_004578977.1 lncRNA upstream 526071 28236673 ~ 28243954 (+) True LOC113534053
TU204603 lncRNA upstream 578113 28148577 ~ 28191912 (+) True G172873
TU204941 lncRNA downstream 26102 28798167 ~ 28807149 (+) True G173143
TU204959 lncRNA downstream 48435 28820500 ~ 28825365 (+) True G173154
TU204961 lncRNA downstream 60281 28832346 ~ 28864098 (+) True G173156
TU204956 lncRNA downstream 89418 28861483 ~ 28935700 (+) False brms1la
TU205007 lncRNA downstream 142027 28914092 ~ 28973429 (+) True G173198
XM_026926002.2 mRNA upstream 6010 28759865 ~ 28764015 (+) True psma6a
XM_026925996.2 mRNA upstream 10631 28742067 ~ 28759394 (+) True prorp
XM_026925997.2 mRNA upstream 10896 28742052 ~ 28759129 (+) False prorp
XM_034307928.1 mRNA upstream 34135 28730429 ~ 28735890 (+) True fam177a1
XM_034307929.1 mRNA upstream 34135 28730429 ~ 28735890 (+) False fam177a1
XM_026926004.2 mRNA downstream 20774 28792839 ~ 28796775 (+) True LOC113533718
XM_034308076.1 mRNA downstream 89397 28861462 ~ 28866650 (+) True brms1la
XM_026926000.2 mRNA downstream 89397 28861462 ~ 28866650 (+) False brms1la
XM_026925999.2 mRNA downstream 89397 28861462 ~ 28866650 (+) False brms1la
XM_026926871.2 mRNA downstream 123827 28895892 ~ 28898603 (+) True il17a/f1
trnak-uuu_7 other upstream 1044746 27725207 ~ 27725279 (+) True trnak-uuu_7
XR_003403449.2 other upstream 1304376 27156343 ~ 27465649 (+) False nrxn3a
XR_003403450.2 other upstream 1304376 27156343 ~ 27465649 (+) False nrxn3a
XR_003403451.2 other upstream 1304376 27156343 ~ 27465649 (+) False nrxn3a
trnat-ugu_12 other upstream 1854595 26915358 ~ 26915430 (+) True trnat-ugu_12
TU205054 other downstream 297655 29069720 ~ 29073089 (+) True G173221
TU205058 other downstream 321426 29093491 ~ 29138776 (+) False nrde2

Expression Profile