RNA id: TU205007


Basic Information

Item Value
RNA id TU205007
length 221
lncRNA type sense_over
GC content 0.53
exon number 2
gene id G173198
representative True

Chromosome Information

Item Value
chromosome id NC_047604.1
NCBI id CM018550.1
chromosome length 29376037
location 28914092 ~ 28973429 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ggggatttgtgttcattcagctacaagagcattagtgaggtcaggcgctgatgttgggatgtcgaggaggtctggggttcagtcggtgttccagttcatcccaaaggtgttcagtggggttgaggtcagggctctgtgcaggacactcgagttcttccactccaatcttcacacaccatgtcttcatggagctcgctttgtgcacaggggcattgtcatgc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU204961 lncRNA upstream 49994 28832346 ~ 28864098 (+) True G173156
TU204959 lncRNA upstream 88727 28820500 ~ 28825365 (+) True G173154
TU204941 lncRNA upstream 106943 28798167 ~ 28807149 (+) True G173143
TU204932 lncRNA upstream 142027 28770025 ~ 28772065 (+) True G173140
TU204884 lncRNA upstream 382401 28531459 ~ 28531691 (+) True G173106
TU205026 lncRNA downstream 15690 28989119 ~ 28989706 (+) True G173208
TU205027 lncRNA downstream 15925 28989354 ~ 28989706 (+) False G173208
TU205028 lncRNA downstream 17368 28990797 ~ 28993470 (+) True G173209
XR_004578930.1 lncRNA downstream 79707 29053136 ~ 29054210 (+) True LOC117598233
TU205051 lncRNA downstream 90753 29064182 ~ 29173464 (+) False LOC117598323
XM_026926871.2 mRNA upstream 15489 28895892 ~ 28898603 (+) True il17a/f1
XM_034308076.1 mRNA upstream 47442 28861462 ~ 28866650 (+) True brms1la
XM_026926000.2 mRNA upstream 47442 28861462 ~ 28866650 (+) False brms1la
XM_026925999.2 mRNA upstream 47442 28861462 ~ 28866650 (+) False brms1la
XM_026926004.2 mRNA upstream 117317 28792839 ~ 28796775 (+) True LOC113533718
XM_034308360.1 mRNA downstream 23595 28997024 ~ 29006766 (+) True ankef1b
XM_026911914.2 mRNA downstream 35091 29008520 ~ 29026238 (+) True snap25b
XM_034307949.1 mRNA downstream 55241 29028670 ~ 29051439 (+) True ahctf1
XM_034308248.1 mRNA downstream 80804 29054233 ~ 29067337 (+) True kif28
XM_034308216.1 mRNA downstream 102173 29075602 ~ 29087181 (+) True ttc7b
trnak-uuu_7 other upstream 1188813 27725207 ~ 27725279 (+) True trnak-uuu_7
XR_003403449.2 other upstream 1448443 27156343 ~ 27465649 (+) False nrxn3a
XR_003403450.2 other upstream 1448443 27156343 ~ 27465649 (+) False nrxn3a
XR_003403451.2 other upstream 1448443 27156343 ~ 27465649 (+) False nrxn3a
trnat-ugu_12 other upstream 1998662 26915358 ~ 26915430 (+) True trnat-ugu_12
TU205054 other downstream 96291 29069720 ~ 29073089 (+) True G173221
TU205058 other downstream 120062 29093491 ~ 29138776 (+) False nrde2

Expression Profile