RNA id: TU205027


Basic Information

Item Value
RNA id TU205027
length 273
lncRNA type inter_gene
GC content 0.52
exon number 2
gene id G173208
representative False

Chromosome Information

Item Value
chromosome id NC_047604.1
NCBI id CM018550.1
chromosome length 29376037
location 28989119 ~ 28989706 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TCGGACTGTAGTAAAGTCGGACTGTAGTAAAGTCGGACTGCGGTAAAGTCGGACTGCGGTAAACTCGGACTGTAGTAAAGTCGGACTGCGGTAAAGTCGGACTGTACCACGTCTCCATGGGGGAAGAGCTGATAGAGCGAGGGGCGGGTTTTCTCGATCTCCACGGAGATGGTGATCCTGTTCTTCTCCTCCTGTGTGGCGTTGTAGAGTTTCACCTGCTCGATCATCTTCATCTGTTCATCAGCGTTACGaccctgaacacacaaacacgca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU205007 lncRNA upstream 15925 28914092 ~ 28973429 (+) True G173198
TU204956 lncRNA upstream 53654 28861483 ~ 28935700 (+) False brms1la
TU205013 lncRNA upstream 66268 28921469 ~ 28923086 (+) True G173201
TU205010 lncRNA upstream 67955 28921003 ~ 28921399 (+) True G173200
TU204961 lncRNA upstream 125256 28832346 ~ 28864098 (+) True G173156
TU205028 lncRNA downstream 1091 28990797 ~ 28993470 (+) True G173209
XR_004578930.1 lncRNA downstream 63430 29053136 ~ 29054210 (+) True LOC117598233
TU205051 lncRNA downstream 74476 29064182 ~ 29173464 (+) False LOC117598323
TU205043 lncRNA downstream 77136 29066842 ~ 29138878 (+) False kif28
TU205052 lncRNA downstream 81826 29071532 ~ 29073089 (+) False G173221
XM_026911907.2 mRNA upstream 5485 28968131 ~ 28983869 (+) True emilin1b
XM_026926871.2 mRNA upstream 90751 28895892 ~ 28898603 (+) True il17a/f1
XM_034308076.1 mRNA upstream 122704 28861462 ~ 28866650 (+) True brms1la
XM_034308360.1 mRNA downstream 7318 28997024 ~ 29006766 (+) True ankef1b
XM_026911914.2 mRNA downstream 18814 29008520 ~ 29026238 (+) True snap25b
XM_034307949.1 mRNA downstream 38964 29028670 ~ 29051439 (+) True ahctf1
XM_034308248.1 mRNA downstream 64527 29054233 ~ 29067337 (+) True kif28
XM_034308216.1 mRNA downstream 85896 29075602 ~ 29087181 (+) True ttc7b
trnak-uuu_7 other upstream 1264075 27725207 ~ 27725279 (+) True trnak-uuu_7
XR_003403449.2 other upstream 1523705 27156343 ~ 27465649 (+) False nrxn3a
XR_003403450.2 other upstream 1523705 27156343 ~ 27465649 (+) False nrxn3a
XR_003403451.2 other upstream 1523705 27156343 ~ 27465649 (+) False nrxn3a
trnat-ugu_12 other upstream 2073924 26915358 ~ 26915430 (+) True trnat-ugu_12
TU205054 other downstream 80014 29069720 ~ 29073089 (+) True G173221
TU205058 other downstream 103785 29093491 ~ 29138776 (+) False nrde2

Expression Profile