RNA id: TU205036


Basic Information

Item Value
RNA id TU205036
length 682
lncRNA type intronic
GC content 0.53
exon number 2
gene id G173215
representative True

Chromosome Information

Item Value
chromosome id NC_047604.1
NCBI id CM018550.1
chromosome length 29376037
location 29079237 ~ 29080134 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

gagttccCCCggtcgggtgtgtgtgtgtgagagttccCCCggtcgggtgtgtgtgtgtgttcccccGGTcgggtgtgtgtgtgtgtgagagttccCCCggtcgggtgtgtgtgtgtgttcccccggtcgggtgtgtgtgtgagagttccCCCAGTCGGGTGTGTGGTGACATCTCAGTGATGTGATCTTTTGGCCAGTGAGTGTGAGGAGACAGACACATGGCAGAAAGACGGAGAATGAAGATATCTGATGGTCAGAACAGCAGGAATGGACGACCGAAGCACAAGGTGAAGAACATCTGATAGTGGCTGTAGTGTTGGTGGTGATGTTCTACAGCTTCATCATGGTCCAGTTCTCCTGCTTCTGAGGAACACTGGAGCATGAACTTGGAGTGTCGATCAGGAGAGGGTTCTTGGCTGTTTGCAAGCTGTCCATCATGTAAGGCAGCAGTAATAGTGAACAGTACAAGTGCACCACTGTCTTCTCCTGCCAGCCAATCACCATGCAGCATTTAgtcagggggcggggcttaggTCCAGGTCCTGGAAGGAGAGATTACAGGAATGACCTGTGGCGAGATGTTTTAGTCTGCAGTAGTTTCGTTTCCTGTGTATTAGAGTACAGCTGTCTGTcacctctccctccctctctctctctctctctctctctctctctctctctc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU205052 lncRNA upstream 6148 29071532 ~ 29073089 (+) False G173221
XR_004578930.1 lncRNA upstream 25027 29053136 ~ 29054210 (+) True LOC117598233
TU205028 lncRNA upstream 85767 28990797 ~ 28993470 (+) True G173209
TU205026 lncRNA upstream 89531 28989119 ~ 28989706 (+) True G173208
TU205027 lncRNA upstream 89531 28989354 ~ 28989706 (+) False G173208
TU205062 lncRNA downstream 37190 29117324 ~ 29119753 (+) True G173228
TU205050 lncRNA downstream 88632 29168766 ~ 29173464 (+) True LOC117598323
XR_004578993.1 lncRNA downstream 88700 29168834 ~ 29173095 (+) False LOC117598323
TU205073 lncRNA downstream 89740 29169874 ~ 29170599 (+) True G173237
TU205268 lncRNA downstream 140919 29221053 ~ 29221649 (+) True G173371
XM_034308248.1 mRNA upstream 11900 29054233 ~ 29067337 (+) True kif28
XM_034307949.1 mRNA upstream 27798 29028670 ~ 29051439 (+) True ahctf1
XM_026911914.2 mRNA upstream 52999 29008520 ~ 29026238 (+) True snap25b
XM_034308360.1 mRNA upstream 72471 28997024 ~ 29006766 (+) True ankef1b
XM_026911907.2 mRNA upstream 95368 28968131 ~ 28983869 (+) True emilin1b
XM_034308249.1 mRNA downstream 13330 29093464 ~ 29099364 (+) True nrde2
XM_034308299.1 mRNA downstream 24194 29104328 ~ 29114239 (+) False fam149b1
XM_034308296.1 mRNA downstream 24194 29104328 ~ 29114237 (+) True fam149b1
XM_034308297.1 mRNA downstream 24194 29104328 ~ 29114237 (+) False fam149b1
XM_034308298.1 mRNA downstream 24194 29104328 ~ 29114237 (+) False fam149b1
TU205054 other upstream 6148 29069720 ~ 29073089 (+) True G173221
trnak-uuu_7 other upstream 1353958 27725207 ~ 27725279 (+) True trnak-uuu_7
XR_003403449.2 other upstream 1613588 27156343 ~ 27465649 (+) False nrxn3a
XR_003403450.2 other upstream 1613588 27156343 ~ 27465649 (+) False nrxn3a
XR_003403451.2 other upstream 1613588 27156343 ~ 27465649 (+) False nrxn3a
TU205058 other downstream 13357 29093491 ~ 29138776 (+) False nrde2

Expression Profile