RNA id: TU205054


Basic Information

Item Value
RNA id TU205054
length 585
RNA type TUCP
GC content 0.59
exon number 2
gene id G173221
representative True

Chromosome Information

Item Value
chromosome id NC_047604.1
NCBI id CM018550.1
chromosome length 29376037
location 29069720 ~ 29073089 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

gtgtgtgtgtgtgtgtgtgtagagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgagtgtatgtgtgtgtgtgtgtgtgagagtgtgtgtgtgtgtgtatgggtgtgtgtgtgtgtgtgtgagagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtggtgtatggtgtgtgtgtgtgtgtgtgtgagtgtgtgtgtgctcCAGGTGCGGGTGGTGTTCAGGTGCTGCAGGTGTTCAGTAATGGAGGTGTGCGGGGGGAAGGCGGACTGGCGGGCGTGGCGGAGGGTctcccaggtgtgtgtgcggCGAGCGTGGGCGTGGCCTCTCTCCTGCTCGAGGCTCAGGTAAGGTCGGCTCAGCCAGTACTCGTTCTCAGCCTCTCGCTCCAGTCGCTCCACCGTGTTCCGCTTCATCTGCCAGGTGACTGGGCGTGGCCGGCGCCACTTCCCGATCCACTGCCGGCCGGGAATTCCCTTCCGCAGCAGAGCCAGAGTCAGGAACATCCTGAACACGGAGCGGGAACACAGCAAGAACACCTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_004578930.1 lncRNA upstream 15510 29053136 ~ 29054210 (+) True LOC117598233
TU205028 lncRNA upstream 76250 28990797 ~ 28993470 (+) True G173209
TU205026 lncRNA upstream 80014 28989119 ~ 28989706 (+) True G173208
TU205027 lncRNA upstream 80014 28989354 ~ 28989706 (+) False G173208
TU205007 lncRNA upstream 96291 28914092 ~ 28973429 (+) True G173198
TU205036 lncRNA downstream 6148 29079237 ~ 29080134 (+) True G173215
TU205062 lncRNA downstream 44235 29117324 ~ 29119753 (+) True G173228
TU205050 lncRNA downstream 95677 29168766 ~ 29173464 (+) True LOC117598323
XR_004578993.1 lncRNA downstream 95745 29168834 ~ 29173095 (+) False LOC117598323
TU205073 lncRNA downstream 96785 29169874 ~ 29170599 (+) True G173237
XM_034308248.1 mRNA upstream 2383 29054233 ~ 29067337 (+) True kif28
XM_034307949.1 mRNA upstream 18281 29028670 ~ 29051439 (+) True ahctf1
XM_026911914.2 mRNA upstream 43482 29008520 ~ 29026238 (+) True snap25b
XM_034308360.1 mRNA upstream 62954 28997024 ~ 29006766 (+) True ankef1b
XM_026911907.2 mRNA upstream 85851 28968131 ~ 28983869 (+) True emilin1b
XM_034308216.1 mRNA downstream 2513 29075602 ~ 29087181 (+) True ttc7b
XM_034308217.1 mRNA downstream 3638 29076727 ~ 29086819 (+) False ttc7b
XM_034308218.1 mRNA downstream 4345 29077434 ~ 29086819 (+) False ttc7b
XM_034308249.1 mRNA downstream 20375 29093464 ~ 29099364 (+) True nrde2
XM_034308299.1 mRNA downstream 31239 29104328 ~ 29114239 (+) False fam149b1
trnak-uuu_7 other upstream 1344441 27725207 ~ 27725279 (+) True trnak-uuu_7
XR_003403449.2 other upstream 1604071 27156343 ~ 27465649 (+) False nrxn3a
XR_003403450.2 other upstream 1604071 27156343 ~ 27465649 (+) False nrxn3a
XR_003403451.2 other upstream 1604071 27156343 ~ 27465649 (+) False nrxn3a
trnat-ugu_12 other upstream 2154290 26915358 ~ 26915430 (+) True trnat-ugu_12
TU205058 other downstream 20402 29093491 ~ 29138776 (+) False nrde2

Expression Profile