RNA id: TU205103


Basic Information

Item Value
RNA id TU205103
length 2671
lncRNA type inter_gene
GC content 0.39
exon number 2
gene id G173260
representative True

Chromosome Information

Item Value
chromosome id NC_047604.1
NCBI id CM018550.1
chromosome length 29376037
location 28933960 ~ 28985241 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CACGATCAttttcctgtatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtatgtgtgtgtatttgtgtgtatatgtatgtgtgtatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtatatgtgtgtgtgtatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtatatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgttagtgatatTCATACAGAAACATTTCTCTTTCCATAAACGACTCTTCTGGCTCACACACTGGAAAATCCGGCGTGTGTACAAAAGCAACAAAAGCGAGCGAGTGTTTTCCGTCTGCAACACggtttgattgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtttttatccgAGAGCTCGTGTGGAGAGTTTTTAAACACGAACAGCTGTGAAAACTCACTGGCCGTCACATTTTAGTGAGCCGAGCTGCTTTCTTTCCCGTTTAACGAACACGCTGCGGCTCTGCTCGGGTTACAGGACCGACGGCTGCGTCCCAAACGCCTACGCCGTGTATTCTAACTGTAAGCCTgggacggtgtgtgtgtgtgtgtgtgtgtgtgtgtgtacatgtactGCATCACAGAGAACATGGGGTGCCATAACTTTTAGACTTTACAATATGCATGAGGAGATTGTAGTCTGCTAGTCTGCTAGCTAAGCGAGTAACTAGCGGTTCCTATGAGATATTGATAGCTGATAATCTGCTAGCTGATGACGTAATTCACTTCATGTGCTTTTCactaaaaacaaagaaaacaaataattcaTTATGATGAAAAAGCATTCATTCACTTTCACTAAGCCTTATTTCAGGCTAATCCTAATGCTAAACTTCCTTATAGTCGCTTTAAATTACTCTACATCATGTACAATAAGTAGCTAAGGTTAATattcttatttataaataaagaaaacacatgATCTTTCCTAATctgaataatatttacataaccctattttattttttttttatgaatataaagtCTGAACTAAAATcagttcattaaaatatttttattttaatattaacactgACGACTCGTCTGAACCCTCGTggatttctgattattttccaaaacgTAGGAAATGAAGCGGAATATTCCAGGACTTTTCCAGGATTTCGGAGAAGGAAGCGTTAACTCCACGTGTTGCTTCTTTCTCAGTGTGAAAGTTCAGCTGATTTAAACCCAGGACAGATCcatggccacgcccacaagaggcGGAGCTGTGTaaaattaaatatctttatttaacACATGTGCTGCCAACAAACACATTCAGAGTCACAGGTTAAACCGCGAGGAGCCGCCACACGTCACGCGGGCTTCAGTTATTCAGCTTCCGTTTCCACCGTTTACAAAGTGAACGTGTTTTCTGAGGGAAAgagtcaaaataataataataataataataataataataataccagcTGGTAATGCAGAAGAGCGAGAGCAGCGTGACGCGTCACTCGAGGCGAGGGTTAGCAGAAACATCTCCTCTCGTTACAAACAGTTAGTGATGAAGTCAGACATTGCTTTGgaatttttcataaaaaaacaaacaaaaacaatgttctATTGATGCTAATTCTCTTTACAGTCGCTTTAAACTCGCACTCGTAATTTCTTTGGCTTTCAGCTGTAAGCACTTTTTCACTGTCTCATTACCAAACCAGGTCATACAAAGATGCTAGTGCTAAAGCTAATTCTCTTTATAGGCACTTTAAAGCTGAAATGCATGAAGGGAGAATGTCAATGTTTTGGTCTGGTTGCTCTGACAtcatgtgaaatatttattttttctgcattgaCCATCCTGGATTTAAGGGAACGCTCTCAACTCAGTGCTAATGCTAGTGGTAACAGTCTTAATGCTAACATTAATGCTAAAACACTTTATCGGCCCTTTAAAGTTGTCATCATTCGGCTTCATTTGTATCATATTCCTTATTGTCTCTAACGCTAATATCCTTTATTGGCTCTTTAAAGTCGTAGTCATAGTTGTTTTGCTGTAGCCATTTTTATAAAACTTCATTGAGAGATAATGTCTTAAAagaatgctaatgctaatgttgctTATAGGCGCTTTAATGTTGATTCACATTGAGGAACACTAACTATTCTGTCAGATGAAGTGAAATGGAGTTAAATTACAAGCCTGAaaattgtcatttatttatttatttatttatttgtttatttatcattgcCTGTAAATATTagccttttttatttatcctGAAATCGTATTTcgttgtttttattaaaacctcATTTTTAATTCTTAGACAGATCTTGTGTGTATTATATtgtgagttttcttttttctataatGTTCATTGATGGCGATGGTTTCCATAGTTACCAGCCAACgtaaagcatttttatttttttgctcttctttccaaacacacacacactcacacacactcacacacacacacacacacacacacacactcacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU205166 lncRNA downstream 59642 28873443 ~ 28874318 (-) True G173293
TU205165 lncRNA downstream 62005 28871470 ~ 28871955 (-) True G173292
TU205129 lncRNA downstream 67285 28865913 ~ 28866675 (-) True G173268
TU205162 lncRNA downstream 69793 28862908 ~ 28864167 (-) True G173289
TU205147 lncRNA downstream 71352 28862052 ~ 28862608 (-) False G173282
TU205107 lncRNA upstream 29108 29014349 ~ 29014929 (-) True G173262
TU205226 lncRNA upstream 84794 29070035 ~ 29071425 (-) True G173338
TU205228 lncRNA upstream 91022 29076263 ~ 29077297 (-) True G173339
TU205160 lncRNA upstream 93173 29078414 ~ 29080610 (-) True G173288
TU205240 lncRNA upstream 122635 29107876 ~ 29108297 (-) True G173349
XM_034307776.1 mRNA downstream 5065 28916376 ~ 28928895 (-) True gpn1
XM_026925987.2 mRNA downstream 25408 28900904 ~ 28908552 (-) False stmn4l
XM_034308308.1 mRNA downstream 48851 28882252 ~ 28885109 (-) True il17a/f2
XM_034308077.1 mRNA downstream 56079 28867671 ~ 28877881 (-) True lrrc57
XM_034308073.1 mRNA downstream 73949 28798149 ~ 28860011 (-) False ralgapa1
XM_034307851.1 mRNA upstream 2118 28987359 ~ 28996157 (-) True khk
XM_034307850.1 mRNA upstream 2118 28987359 ~ 28996156 (-) False khk
XM_034307852.1 mRNA upstream 2118 28987359 ~ 28996155 (-) False khk
XM_034308219.1 mRNA upstream 87463 29072704 ~ 29075467 (-) True mrpl57
XM_034308220.1 mRNA upstream 87463 29072704 ~ 29074793 (-) False mrpl57
XR_004578919.1 other downstream 25408 28900904 ~ 28908552 (-) False stmn4l
XR_004578918.1 other downstream 25408 28900904 ~ 28908552 (-) False stmn4l
XR_004578917.1 other downstream 25408 28900904 ~ 28908552 (-) False stmn4l
XR_004578916.1 other downstream 25408 28900904 ~ 28908552 (-) True stmn4l
TU204662 other downstream 1021416 27912237 ~ 27912544 (-) True G172919
TU205341 other upstream 250678 29235919 ~ 29239270 (-) True G173434
TU205344 other upstream 341685 29326926 ~ 29329076 (-) False smyd3

Expression Profile