RNA id: TU205107


Basic Information

Item Value
RNA id TU205107
length 480
lncRNA type inter_gene
GC content 0.50
exon number 3
gene id G173262
representative True

Chromosome Information

Item Value
chromosome id NC_047604.1
NCBI id CM018550.1
chromosome length 29376037
location 29014349 ~ 29014929 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

cacacacacacacactctctctctctctcacacacacacacacacacacactctctctctctctctctctctctctctcacacacacacacacactctctctctctcacacacacacacacactctctctctcacacacacacacacactctctctctctcacacacacacacactctctctctcacacacactctcacactctctctcacacacacacacacactctctctcacacacacacacacacactctctctctcacacacacacacacactctctctctcacacacacacacacactctctctctcacacacacacacacactctctctctctctctctctcacacacacacacactctctctctctctctctctctctctctctctctctctctctctcacacacacacacacacacacacactctctctctctctctctctcacacacacacacacacacactctctctca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU205103 lncRNA downstream 29108 28933960 ~ 28985241 (-) True G173260
TU205105 lncRNA downstream 30288 28933960 ~ 28984061 (-) False G173260
TU205104 lncRNA downstream 30413 28933960 ~ 28983936 (-) False G173260
TU205166 lncRNA downstream 140031 28873443 ~ 28874318 (-) True G173293
TU205165 lncRNA downstream 142394 28871470 ~ 28871955 (-) True G173292
TU205226 lncRNA upstream 55106 29070035 ~ 29071425 (-) True G173338
TU205228 lncRNA upstream 61334 29076263 ~ 29077297 (-) True G173339
TU205160 lncRNA upstream 63485 29078414 ~ 29080610 (-) True G173288
TU205240 lncRNA upstream 92947 29107876 ~ 29108297 (-) True G173349
TU205241 lncRNA upstream 92947 29107876 ~ 29108297 (-) False G173349
XM_034307851.1 mRNA downstream 18192 28987359 ~ 28996157 (-) True khk
XM_034307850.1 mRNA downstream 18193 28987359 ~ 28996156 (-) False khk
XM_034307852.1 mRNA downstream 18194 28987359 ~ 28996155 (-) False khk
XM_034307776.1 mRNA downstream 85454 28916376 ~ 28928895 (-) True gpn1
XM_026925987.2 mRNA downstream 105797 28900904 ~ 28908552 (-) False stmn4l
XM_034308219.1 mRNA upstream 57775 29072704 ~ 29075467 (-) True mrpl57
XM_034308220.1 mRNA upstream 57775 29072704 ~ 29074793 (-) False mrpl57
XM_034308210.1 mRNA upstream 74243 29089172 ~ 29092223 (-) True calm1a
XM_034308211.1 mRNA upstream 74305 29089234 ~ 29091389 (-) False calm1a
XM_034308295.1 mRNA upstream 103444 29118373 ~ 29130728 (-) True ndnfl
XR_004578919.1 other downstream 105797 28900904 ~ 28908552 (-) False stmn4l
XR_004578918.1 other downstream 105797 28900904 ~ 28908552 (-) False stmn4l
XR_004578917.1 other downstream 105797 28900904 ~ 28908552 (-) False stmn4l
XR_004578916.1 other downstream 105797 28900904 ~ 28908552 (-) True stmn4l
TU204662 other downstream 1101805 27912237 ~ 27912544 (-) True G172919
TU205341 other upstream 220990 29235919 ~ 29239270 (-) True G173434
TU205344 other upstream 311997 29326926 ~ 29329076 (-) False smyd3

Expression Profile