RNA id: XM_034308071.1


Basic Information

Item Value
RNA id XM_034308071.1
length 9985
RNA type mRNA
GC content 0.53
exon number 41
gene id ralgapa1
representative True

Chromosome Information

Item Value
chromosome id NC_047604.1
NCBI id CM018550.1
chromosome length 29376037
location 28798149 ~ 28860011 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GTTTTTGTCCCTGCTGCTGTTCGCCGCCATGTTGGGATCAGTgcagtaaagagagagagagagagagagagagagagagagagggagaggtgtGGAGCTCACTTTAGCGCAGCTACACGGGATTAAATcggtgttttctctctctcttcactctcaCCGAGCAGAAATGCGCTGCTCTCCTCCAGCTGCTGTTCGGTGTTAGCACTGTGAGCTAGCGCCGTGAGCCCGAGGCAGCAGGAACCGGACGGGAATCTCAGCTCTGCTCTCCGCTCAGCACAATGTTCTCCAAAAAGCCTCACGGAGATGTGCGCAAATCCACCCAGAAGGTGCTGGACCCCAAGAAGGACGTGCTGACGCGCCTCAAACATCTGCGCATCGTCATAGaaaACGCTGAGTCGGCTGAACTGAAACACTTCTTTGACCAGAATTATTCTCACATCTATTACGTCTTCTTCGAGAACTTCGTCAGTATTGAAGCAAACCTGAAACAGAAagGTCATAAATCACAGAGGGAAGAGCTCGACTCCATTCTGTTCATATTTGAGaaaattcTGCAGTTGTTGCCAGAGCGGATTCACGGACGATGGCAGTTTCACAGCATCGGTCTCATACTGAAGAAACTCCTGCACACTGGAAACTCCCTGAAGatccgCAGAGAGGGCGTGCGTCTCTTCCTGCTCTGGCTCCAGGCTCTGCAGTGTAACGCTCTGAGGGAGCAGCTGTGGATTTTCGCCTGCTTGATCCCGGGATTCCCGGCTCctcagtgtgaacacacacctcgCACCCTGGACAGCATCATCAACCCCACACTCGTCCTGCATGAGGCTCAGGTGACTCCTGAGGAGATCAGCCCCCTGGTTCTGCCCCAGTCCGGAGATAAAGCTCAGGAGGATCTGACCGGTTACTTCCTGGAGGCGTTACTGAAGTACATGGTcaaccaggctaAGAGTCTGGAGTGGAGGTGTAGAGAGAACCATGAGAAGGGTTTCGCTTTTCTCTTCGCCAACTTTAAGAAGTTTTATCTTCCTCACATCTTCCCAAACTTCTCCAAAGAGTCCAGCTTGTACGCCCCCATCCTGGACATTCCCCCGATGAGGCCGAAGCCGTCTTACGTGGTTGTTAAAAGGGACCCCGACACTAACGAGGCTCTGTACTGCACTAAAGAGAGCTTCCTGAACGCACGGGTCATCTTCATCCGCTGGCTCGTCTCCTTCTGGCTAGAACCCAAATCCAACACGCTGACAAACATCCCCGGGGTGGAGGGCGAGAATGTGCCGAAGAACATCCAGagagcaGCCGCGGGTCTGGCCATGCGTTCAGAAGAAGGTGGTCCTCGATGTGCAGCTctggatggaggaggaggagaatcGGAGCAGTCTCACTCCAACACGAGCACTCTGACGGAGAGAGAGCCGAGCTCGTCCAGTCTCTGCAGCATGGATGGAGAGAACCTCAGTGCCGTCGAGGTGGTGAAGAACGTTCTGTACTCCTCCAGGACCAACGTCAACTTCATCACCGAGATCTTCAGACAGGCGTTCTTGTTGCCGATGTGTGAGGCGGCAGCGATGCGTAAGGTGGTGCGTGTGTATCAGGAGTGGATCTCTCAAGAGGAAAAGCCTCCGTTTATGGCGGAACCGGAGGAGGACGAGCGCTACCTCGACCCACAGGACCCGGTTCCTGGACCCGGCCCGGAGAACCACCACGAGgagagagTGATGAAGGACAGTGAGATGTTGGAGTACAGTGTACATGCAGGAGTACAGGCCAcactacagGTTTTCATCATCAACTCCTCCAACGTGTTCCTGTTAGAGCCGGCTAACGAGCTGAAGCCTCTGCTGGAGGAACACATCGACATGTGCAAGCGCGTCCTCAACATCTACCGCAGCCTCGTCATGCACCAGAACATGGACCAGAAAACATGGGAGCAGATCCTGCTGGTGTTGCTGAGGGTGAcggagtgtgtgatgaagagGCCTCCCTCCATCATGCCCCAGGGGAAAAAGAGTAACACACTCTCTGGCCGATTAGCAGGAGCCATTTTTCAGACTCTGATCGTGGCGTGGATTAAAGGGAACCTGAACGTGTTTATCTCTCGGGACCTGTGGGACGAGCTGCTCTCCGTGCTCTCCTCTCTCACCTGCTGGGAGGAGCTCGTCACTGAGTGGTCCCTCACCATGGAGACCCTCACCAAGGTGCTGGCCAGGAACCTGTACAGCCTGGACCTGAACGAGCTGCCACTCGATAAGCTCAGCGAGCAGAAACTCAAGAAACACAAGGGCAAAGGTGGCGCTCATGAGGGACAGAAGATGGTGGTGGATCGTTCCTTCTCTAAAGGATGGAGTCGTGATCCTCCGGGTCAGACTGTAGCCATGCGGCAGCGCAGCGCCACCACCGCCGGCTCTCCGGGCATCGAGAAGGCCAGGAGCATCGTCAGGCAGAAAACCATCGCGTTGCGTAGCCGCTCGACGGGTGACAGTCTGTTATCGGCGGCGTTTATCCGCAGTGCTAAAAGTGCTCCTGTGCTAATCCACCCTGTGCACTCTCTCCTTCCTGACTCTGTCCTCACTCCCCTAGCTGACGAGCTGTCAGacatgGAGGAACCCCCTCCGTCTCTCCGTGCCCCTCGTGTGCGTCACTCGTCTCAGAACGAGGAGAGTCCGGCAGGCGAGGTGTTCTGCGTCTCGGCCGATGTGGATCAGACGCCGCTCCCGCGCAGCAGCAGCGCCTCTGACATCATGGAGCCGCTCGTGAAAGgtgcacttcctgtttctgacaCTCCCTCTCACACTGACCCCACCCACTGCCCCTCCCACAGCCCCGCCCACTCCCTCGAAGCAGCTGATAGCATCTATGAGCACCTGTGCCAGGTACCAGAGCCTCAGCTCTCGTTCGTCCCTGATTGGACATTTCtggaggccacacccacaaccACACCTAGTTTACCGGATGGAGGGggaagaggagggagagaggatgACCTCATCCTGGAGGGGGCGGAGCCATGTccagaggaaaaagaggaggagcCAGAGCCAGAGCCAGAGCCGGGCGATCAGAGTTTCTATGAGTGCATAGAGCAGTGCGAGGCAGAGCAAGCGACCAATCAGAAGCCGTTATGTAGGCAAGACGCAACAGAGCGCCTGATCGAGGTCAACTCCGCCCCACATGCCGGGCTCCGCCCTCGAACTAAAAAACGTCCAGGAGGTGGCGTCCATGTCACTTTCCGTCCCTCCACCGAGTCGGTGCACTTCCTGAACCCTCTAGACCCGAAGGAAGCTCACTGGAAAAGTCGACTTCGACGCCTGGGGCACTTCAGTGCGCACTCGCACCCCGGGGCGGGGCCGGCGACGAAGCTCAGAGAGGCGTCCGAGGAGGGGGAGGGGGTGCGTTCCCGCCAGCAGGGCGCGCTGTTAGGTGGCGTTTATAAATCCGTGGCTCACGCTCTCTCCAAACCGAAGAGCCATGGAAAAACCGCTGCCTCGGACGCGCACCTGAAGGACCTGTACACGCATTTTATCGGCTATTTCGGAAGAAAAGCTCCAGccAGTAAAGATGACCTGACGCAGAAGATGCGCTCGGTGTCGAGTGATGTGGAGAGCAGTAACCCCAACGTCAGCGATCTGATGGACGAGTTTATCCAGGAGCGCCTCAGAGCCGGAGGAGCATCGggaaTGGCGAGGCGAGGCAGTAGTCCGGGCAGTTTGGAGATTCCTAAGGATTTTCCGGATGTGTTGACTCGCTCGAGCACCACGCGCCCCGCTGATGACCCCGGCGTGCCCTCCGAGTGGACCTCACCTGCCAGCGCCAGCGggagtgacatcatcagctccgacagccaatcagattcctTCAATGCCTTCCAGTACGACAACAAATTTGAGAacttcaGCTTTTCCCCTGAGGTGTGTGCAGCGGGCTGTATGgagcaggagagtgtgtgtgtggcagcgcACGTGGTGGATGAACAGGATCACTCCAGTCTCACTACACTGCACATCGACTCTGAGACCAGCAGCCTGAGTCAACACGGCCTGTCTGCtgatacactcaccatcaccgGTTCGGGGAGCGCGTCTCCAGTCCACTCCcgctcacacactccatctccTGCTACACTCACCACTGAACACGCTGAACACAAAGATCTGCAGCTGGACGAGAAACTCCATCACTCCGTCCTGCAGACCCCCGACGACCTggAGGCGAGCGAGTTTCCCACGGAGGACTGCAGCGTGATGGCCGGCGGCTCGCTCACCGGTTGGCATGCTGACGTTGCCACGGTGATGTGGAGAAGGATGCTCGGGATTCTGGGAGATGTGAACACTATTAAAGACCCAGAGATCCATGCACAGGTGTTCGATTACCTCTGTGAGCTCTGGCAGAACCTGgccaagatccGTGATAATCTGGGAATCTCTATCGACAATCAGtcgtctcctcctcctccggaCCTGATTCCCCCACTGAGAATCCTCACACCCTGGCTCTTTAAAgccACCATGTTGTCAGAGAAGTATAAACAGGGGAAGCTGCACGCGTATAAACTGATCTGTAAGATCATGAAGAGGAGGCAGGACGTCTCGCCCAACTCTGACTTCCTCACACACTTCTACAACATCATGCACTGCGGCCTGCTGCACCAcgaccaggacattGTGAACACCATCATTAAACACTGCTCACCCCGTTTCTTCTCCATCGGGCTGCCGGGAGCCACCATGCTCATCCTCGACTTCATCGCTGCAGCCAGCAGAGTGACGGCCTGCTCCTCTCTCAACgctccGAGGGTGGAGGCTCAGATCTTGTTGGGTTCTCTGGTGTGTTTTCCGAACCTGTATGAGGAGCTTCCTGCTCTTCATCCCACCACCGCTGATGTCTTCCTGACCAAATTTAAGGACGTCAaggagCACATTATTAAACACATCTTAACCTCAGCTAGAGATGAGCCGTCTGCCCCtgccaggtgtgtaGCTCTGTGTAGTTTAGGTATATGGCTGTGTGAGGAACTCGTCCACGGCACACGACACCCGCAGATTAAAGAAGCTCTAAACGTCATCTGTGTCACTCTGAAGTTTCCTAATAAAACCGTGGCGCTGGTGGCTTCAGACATCCTGCATCTCCTCATCAACTACGTCGACCATCTGCAGAAGTTCCCCCCCGACACGCCCAAGAAAATAGTGGAGATCCTCATAGCGACCATCACCTACCTGCTGCCTACTACTGAGTCTTCTCCTCACGAGCTGGACAagaggctggtaGTGTCCCTCCTGCTGTGTTTGTTGGACTGGGTCATGGCTCTTCCTCCGAAAACTCTGCTGCAGCCGATTCAGACTCTTTCACAGGACAAAGACAAATCAGACAGAACCGTCCTCAGTGCCATCTATAaggtgcTGCACGGCTGTGTGTATGGAGCTCAGAGTTTCAGTAATCCTCGTTATTTCCCTCTGAATCTCTCTGACCTCAGCAGCTCGACCTTTGACCCCTTCCTAGTGCTGGAGAGTTTGAAGGAGCCCGAGCCCCTGCACTCGCCCGACTCGGAGCGCTCGTCTAAAATACAGCCGGTCACTGAAGTGAGGAGCCGTATGCAGCAGGGTCTGATCTCCATCACCGCTCGGACGCTGGTGTCTCACCTGTTGAATCACCTGTCTCACTTCCCTCTGGGCGGGGGAGGTCCGGCCGCTCTGACCAGTCAGGTGTGTGAGAACCAGGACAACCCGTACTGCCAGAACGCCGACCTCGCTCCCGAGCTCTTCCACACGCCCAACCTGCAGTTCTTCGTCCTGAACGGTTCCACGCTGCTCTCCTGCCTCCAGATCCGCTCCGACGACAACATGGCCGCCGGTCTCGTCGCCCCCGACGCCTGCGTCCGCCTCGTCGTCAGGGACATTTCCGGAAAGCACTCGTGGGATTCGGCCGTGCTCTACGGCCCGCCTCAGTGCGCTCCTCAGAGCCGAGCGCCACGCTCACACACCTCCTCCAGTCCTGCAGGGAGCGACGGAGAGCACGCCGCAGAACCAGACTCGGTAGAGCAGGATGAGAAGGACGACCTCTCGGAGAACAAGGATGCGGAAAAAGAGGaggacgaagaagaagaaggagaggaggaagaggaggaggagacgcTTTCAGAGACGATGGCGCCGTTAGCGAAGCGGCGGTGCCGTGAAATGATTCCGAGTTGGGATTCTCTTCAGGACGGTGAAGATGTTTTGGACGAGGTGCTGCAGTACTTGGGTTCTTCGAGTCCAGAGTGCCTCCAGAGAACCGGAATGCCGCTGAACATCCCGGCTCCGCCCCCTTGCTGCGTGTCGGAGAAACAGGAGAACGACGTCATCAACGCCATCCTGAAGCAGAGCGCAGAGGAGTGGGACTTCGCCGCGAAACACGGCAACGACGTCCACATGAAGGCGATGGAGCAGCCAGAGCCCACGGCCCAGAGACCCCAGTCCGCCTTCTACTACTGCAGACTCCTGCTCAACATCCTGGGCATGAACTCCTGGGAGAAgagGAGCAGCTTCCACCTGCTGAAGAAGAACGAGAAGCTGCTGAGGGAGCTGAAGAACCTCGACTCCAGACAGTGCCGCGAGACACACAAGATCGCTGTGTTCTACGTGGCGGAGGGACAGGAGGACAAACACTCCATTCTGTCCAACACCAGCGGCAGTCAGGCGTACGAGGACTTTGTGTCTGGACTGGGATGGGAGgtgaacCTGACGAGTCACTGTGGCTTCATGGGAGGTCTCCAGAGGAATAAGAGTACGGGTTTGACCATGCCGTACTTCGCCACGTCCACCGTGGAGGTCATGTTCCACGTGTCCACTCGCATGCCACCTGACTCAGACGACTCACTCACCAAAAAGctaaggcaCCTGGGGAACGATGAGGTTCACATCGTGTGGTCGGAACACACGCGGGACTACAGGAGGGGAATAATCCCAACCGAGTTCGGAGACGTCCTCATCGTCATCTACCCCATGAAGAACCACATGTACAGCATCCAGATCATCAAGAAACCAGAGgTGCCGTTCTTCGGGCCGCTGTTTGATGGCGCTATAGTGGACAGTAAGATTTTACCCACGATGGTGCGAGCGACGGCCATCAACGCCAGCCGCGCTCTCAAATCCCTCATCGCCCTCTACCAGAACTTTTATGAGGAGCGAGCGCGGTATCTGGAGTCGATCGTGGAGCACCACGTGGAGTTGAGCACGTTTGAGGACTATGCAGCGCGTGTGTTTAGCCCCGCCCCGTTCCACCACCCTCCCAGCGAATCAGGTTCCTTCCTGGAGAACCCGCTGTGTGAGAACCCGAGTGCGCCGCTGGACGCCGCTGATTTCTCGTCGCCCATCTCTCCCCGAGCCAGCAAGAGCCGCGTGTCCATGAAGCTGCGACGCTCGTCAGGATCGGCCAACaagacctgaacacacacacacacacacacacacacacacacacacacagagcacatcGATCACTAAAATATACACGCACTGCACACTCCACtgcactgctcacacacacacacacacacacacagtcacgtGTTGATAATTGTTTGTATGATGCATCATGATATTTTGATAAGTCGTGAAATCGTTGTTTCTGATGAAAGGTTACTGAGGACGCCGGCGCCATGGTAACGGCCCGTGCGTCTGTTCCGATCCGTGGTTTCTGATGTAACATGGCCGTGTTACTGAGATCAGACCGGATTAAACACGGACTGATCCCCACCTGCACGTTTCCTCAGCTTCAGTTACTGCCGTGTTTTATTACTCTGTACACGCGAGGAAGCAAGTCGACTTCTCCGtgtgaaatgaaacacagccGCTTCCTGTTACATCATTCAATCATCGCTTTAACGTTTTTATCCGATGACGCAACACTACCGTTCTCTTCTGCTCGTCTAACACGCGTCCTCTTCACCTCAGACGCGCTCGAGCGGAACCTCCAGCTACCGCGCTCATGCGCTTGGTGACTCCGCCCACTGCGCCGTCTCCTCTGTGATTGTGCAGGagattttggggaaaataaaGTCAGAATATTATCTGCTCAAATTCGTCTAGATTTAAAACTTACTTCATTCCCTTTTTATACTAAACAGCTTAAAAAATCAGAGTGAGAAATGAgcgaaaaaagaaaagattcaaAAACCGGAAAATAGTTttggatttgaaaaaaaagagcaaaaactttactttaatataaacgaaaaaatatatacacacacacacacacatatatatagtgtgtgaaaataaattacattaaatttactcagtaaataattaaagtaaaaatttaCAGACTATAAACTAGTAAAACAGGCAGATCATcataatgaaattattaatagtcgagacagaaagaaaaaatcacGTAAAATCTAAAagtatattttgtaaaataaacacagatataAATTCCGTCACGTGGACGAATAAATCAGTGACGCCGAAAAGTAAACAGCTCAGAAATAACGCTCGAGTCGAGCTGGAGTTGCCGCTGCACTGGAGGCTCCGAGCTGCTGCTTCCCGCGAGCTTGAGGAGCGGAGAGGAAACGGCCAACCTGCACTTTCATTTCACTCGATTGTGTTTCTCTACTGTACAGaagcaccgtgtgtgtgtgtgtgtgtttatttcactcCTAATACCgccacacgtgtgtgtgtgtttgtatataaatataaatagagtTGTGAGACGTGTATCTGCGTATTTAAGGGGTGTGTGTAGTGGGTGAGCTGCGTCTGGTCTGTGTACATAATAACAGTATTTAAAGCAGCCGAGAAAAAACGAAACTAAACACTAAATGAGCCTCGAGTTCAGTACTGAAGCTTCGTCACTCTGCcgaatccacacacacacacacacacacacacacacacacacacacacagccaggagGCCCTTATTTTCCTCCAGACGTGTGAAACGTGTCGGCCGGAGcgttctctctcacactcatacacacctttacacacgtCAGCTAATGATTCTTTACAAAAGTAAAAGCCGACCGCATCACGATGTCAGAGTTCAGCTCTGGAGCTAAAGATAAACGAAACCAAACCAAAGACACATCAGAGCCGTGGATACACGCTGGAGCAAAAGTAAGTGCCCCCCAGACGTGCACTGATTAACGCTGACTTCTaaagctctttttttatttaagacgTTACAGtacttttcatttttgattttctttcctgaaatgtcatttttggtgaacagtgaaattttttttactgcctgagAAATGACTACAGACAGATGAGGAACGCCTTCCTTCCTCCACACTCtataaatatgcatgaatatgcaaatatggGAACGCCCCCACATCCTCCTGGCATCTCCAACAGCTGTGAGTCAGCTAGCGAGCTGAAGAGCTAGTAAACCCGCTCCCGTTAGTCACATGACTGGGAATATAACGTTACCATGACGACTAATCACCACCGTTAGTTAACTTAGCAAACTAGCTTAGCACACAGGTTGTGTTAGCGTTATTATTATGGAGATTATGGAGattattttgtgacatcacaaaccgAGCTCATGcatagccccgcccccaaatcaGTTTATATGTGGAAGATCTGAGGAAGTCTCCGAGTTTCTCGGAGTGTTAGGGCCGCTCCGTCGCTGTTCAGGGCTCTGAGGTGTGTGTCTGCGGTTCAGGAAGGAGGGAAGAAGGTTTTATAGAGTGTTTCTGCTGTAAATGTGACGCGTCCCAGAAGCCTGAATATTTTCCACACAGGCTCGAGATGGTTTTTCTCTCAGAAAGCTGAAACGTGGACGTGTGAGATGCTGGTGTGCGTTACTGTCCAGAGAGAGATCGCTGCATGACGCACATGCTAACTGCATGCATTAGGaaaactacacaacacacacacacacacacacacacacacagagtctcatCTACACGTTTGTAAAGAGGAAAATcagctaaacacacaaataaaaagtattctTCTCACTTACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU205136 lncRNA downstream 39243 28757778 ~ 28758906 (-) True G173274
TU205092 lncRNA downstream 81478 28715522 ~ 28716671 (-) True G173255
TU205077 lncRNA downstream 129929 28667813 ~ 28668220 (-) True G173240
TU204888 lncRNA downstream 240868 28557079 ~ 28557281 (-) True G173110
TU204844 lncRNA downstream 453382 28344439 ~ 28344767 (-) True G173067
TU205145 lncRNA upstream 1390 28861401 ~ 28861869 (-) False G173282
TU205147 lncRNA upstream 2041 28862052 ~ 28862608 (-) False G173282
TU205149 lncRNA upstream 2041 28862052 ~ 28862608 (-) True G173282
TU205162 lncRNA upstream 2897 28862908 ~ 28864167 (-) True G173289
TU205129 lncRNA upstream 5902 28865913 ~ 28866675 (-) True G173268
XM_026926643.2 mRNA downstream 25987 28768475 ~ 28772162 (-) True nfkbiab
XM_026925998.2 mRNA downstream 56078 28736318 ~ 28742071 (-) True ppp2r3c
XM_026926568.2 mRNA downstream 68662 28722659 ~ 28729487 (-) True LOC113534010
XM_026926576.2 mRNA downstream 106747 28687175 ~ 28691402 (-) True gemin2
XM_026926578.2 mRNA downstream 111898 28680699 ~ 28686251 (-) True pnn
XM_034308077.1 mRNA upstream 7660 28867671 ~ 28877881 (-) True lrrc57
XM_034308308.1 mRNA upstream 22241 28882252 ~ 28885109 (-) True il17a/f2
XM_026925987.2 mRNA upstream 40893 28900904 ~ 28908552 (-) False stmn4l
XM_034307776.1 mRNA upstream 56365 28916376 ~ 28928895 (-) True gpn1
XM_034307851.1 mRNA upstream 127348 28987359 ~ 28996157 (-) True khk
TU204662 other downstream 885605 27912237 ~ 27912544 (-) True G172919
TU204658 other downstream 887259 27899491 ~ 27910890 (-) True si:ch73-204p21.2
TU204659 other downstream 887259 27899491 ~ 27910890 (-) False si:ch73-204p21.2
TU203284 other downstream 3215622 25578939 ~ 25582527 (-) True G171734
TU203074 other downstream 3538787 25258839 ~ 25259362 (-) True G171569
XR_004578919.1 other upstream 40893 28900904 ~ 28908552 (-) False stmn4l
XR_004578918.1 other upstream 40893 28900904 ~ 28908552 (-) False stmn4l
XR_004578917.1 other upstream 40893 28900904 ~ 28908552 (-) False stmn4l
XR_004578916.1 other upstream 40893 28900904 ~ 28908552 (-) True stmn4l
TU205341 other upstream 375908 29235919 ~ 29239270 (-) True G173434

Expression Profile